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| | <StructureSection load='7dk8' size='340' side='right'caption='[[7dk8]], [[Resolution|resolution]] 1.99Å' scene=''> | | <StructureSection load='7dk8' size='340' side='right'caption='[[7dk8]], [[Resolution|resolution]] 1.99Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[7dk8]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Indian_rice Indian rice]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DK8 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=7DK8 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7dk8]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Oryza_sativa_Indica_Group Oryza sativa Indica Group]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7DK8 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7DK8 FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">GH3.8, OsI_025789 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39946 Indian rice])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AMP:ADENOSINE+MONOPHOSPHATE'>AMP</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=7dk8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dk8 OCA], [http://pdbe.org/7dk8 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=7dk8 RCSB], [http://www.ebi.ac.uk/pdbsum/7dk8 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=7dk8 ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7dk8 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7dk8 OCA], [https://pdbe.org/7dk8 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7dk8 RCSB], [https://www.ebi.ac.uk/pdbsum/7dk8 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7dk8 ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | == Function == | | == Function == |
| - | [[http://www.uniprot.org/uniprot/GH38_ORYSI GH38_ORYSI]] May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. | + | [https://www.uniprot.org/uniprot/GH38_ORYSI GH38_ORYSI] May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin. |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Indian rice]] | |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Ming, Z H]] | + | [[Category: Oryza sativa Indica Group]] |
| - | [[Category: Xu, G L]] | + | [[Category: Ming ZH]] |
| - | [[Category: Zhang, Y K]] | + | [[Category: Xu GL]] |
| - | [[Category: Active site]] | + | [[Category: Zhang YK]] |
| - | [[Category: Acyl acid amido synthetase]]
| + | |
| - | [[Category: Auxin]]
| + | |
| - | [[Category: Plant protein]]
| + | |
| Structural highlights
Function
GH38_ORYSI May catalyze the synthesis of indole-3-acetic acid (IAA)-amino acid conjugates, providing a mechanism for the plant to cope with the presence of excess auxin.
Publication Abstract from PubMed
The Gretchen Hagen 3 (GH3) family of acyl acid amido synthetases regulate the levels and activities of plant hormones containing carboxyl groups, thereby modulating diverse physiological responses. While structure-function relationships have been elucidated for dicotyledonous GH3s, the catalytic mechanism of monocotyledonous GH3 remains elusive. Rice (Oryza sativa) is a representative monocot, and its yield is controlled by the natural growth hormone IAA (indole-3-acetic acid). OsGH3-8 is a model GH3 enzyme that conjugates excess IAA to amino acids in an ATP-dependent manner, ensuring auxin homeostasis and regulating disease resistance, growth and development. Here, we report the crystal structure of OsGH3-8 protein in complex with AMP to uncover the molecular and structural basis for the activity of monocotyledonous GH3-8. Structural and sequence comparisons with other GH3 proteins reveal that the AMP/ATP binding sites are highly conserved. Molecular docking studies with IAA, the GH3-inhibitor Adenosine-5'-[2-(1H-indol-3-yl)ethyl]phosphate (AIEP), and Aspartate provide important information for substrate binding and selectivity of OsGH3-8. Moreover, the observation that AIEP nearly occupies the entire binding site for AMP, IAA and amino acid, offers a ready explanation for the inhibitory effect of AIEP. Taken together, the present study provides vital insights into the molecular mechanisms of monocot GH3 function, and will help to shape the future designs of effective inhibitors.
Crystal structure of the acyl acid amido synthetase GH3-8 from Oryza sativa.,Xu G, Zhang Y, Li M, Jiao X, Zhou L, Ming Z Biochem Biophys Res Commun. 2020 Nov 30. pii: S0006-291X(20)32142-2. doi:, 10.1016/j.bbrc.2020.11.098. PMID:33272567[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Xu G, Zhang Y, Li M, Jiao X, Zhou L, Ming Z. Crystal structure of the acyl acid amido synthetase GH3-8 from Oryza sativa. Biochem Biophys Res Commun. 2020 Nov 30. pii: S0006-291X(20)32142-2. doi:, 10.1016/j.bbrc.2020.11.098. PMID:33272567 doi:http://dx.doi.org/10.1016/j.bbrc.2020.11.098
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