7f2v
From Proteopedia
(Difference between revisions)
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==Urate oxidase from Thermobispora bispora in apo form== | ==Urate oxidase from Thermobispora bispora in apo form== | ||
- | <StructureSection load='7f2v' size='340' side='right'caption='[[7f2v]]' scene=''> | + | <StructureSection load='7f2v' size='340' side='right'caption='[[7f2v]], [[Resolution|resolution]] 1.60Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7F2V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7F2V FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7f2v]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Thermobispora_bispora_DSM_43833 Thermobispora bispora DSM 43833]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7F2V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7F2V FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7f2v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7f2v OCA], [https://pdbe.org/7f2v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7f2v RCSB], [https://www.ebi.ac.uk/pdbsum/7f2v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7f2v ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.6Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=DMS:DIMETHYL+SULFOXIDE'>DMS</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7f2v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7f2v OCA], [https://pdbe.org/7f2v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7f2v RCSB], [https://www.ebi.ac.uk/pdbsum/7f2v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7f2v ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/D6Y599_THEBD D6Y599_THEBD] Catalyzes the oxidation of uric acid to 5-hydroxyisourate, which is further processed to form (S)-allantoin.[PIRNR:PIRNR000241][RuleBase:RU004455] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Microbial urate oxidase has emerged as a potential source of therapeutic properties for hyperuricemia in arthritic gout and renal disease. The thermostability and long-term thermal tolerance of the enzyme need to be established to prolong its therapeutic effects. Here, we present the biochemical and structural aspects of a hyperthermostable urate oxidase (TbUox) from the thermophilic microorganism Thermobispora bispora. Enzymatic characterization of TbUox revealed that it was active over a wide range of temperatures, from 30 to 70 degrees C, with optimal activity at 65 degrees C and pH 8.0, which suggests its applicability under physiological conditions. Moreover, TbUox exhibits high thermostability from 10 to 65 degrees C, with Tm of 70.3 degrees C and near-neutral pH stability from pH 7.0 to 8.0 and high thermal tolerance. The crystal structures of TbUox revealed a distinct feature of the C-terminal loop extensions that may help with protein stability via inter-subunit interactions. In addition, the high thermal tolerance of TbUox may be contributed by the extensive inter-subunit contacts via salt bridges, hydrogen bonds, and hydrophobic interactions. The findings in this study provide a molecular basis for the thermophilic TbUox urate oxidase for application in hyperuricemia and gout therapy. | ||
+ | |||
+ | Structural and biochemical insights into a hyperthermostable urate oxidase from Thermobispora bispora for hyperuricemia and gout therapy.,Chiu YC, Hsu TS, Huang CY, Hsu CH Int J Biol Macromol. 2021 Oct 1;188:914-923. doi: 10.1016/j.ijbiomac.2021.08.081., Epub 2021 Aug 14. PMID:34403675<ref>PMID:34403675</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7f2v" style="background-color:#fffaf0;"></div> | ||
+ | |||
+ | ==See Also== | ||
+ | *[[Urate oxidase 3D structures|Urate oxidase 3D structures]] | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
+ | [[Category: Thermobispora bispora DSM 43833]] | ||
[[Category: Chiu YC]] | [[Category: Chiu YC]] | ||
[[Category: Hsu CH]] | [[Category: Hsu CH]] | ||
[[Category: Hsu TS]] | [[Category: Hsu TS]] | ||
[[Category: Huang CY]] | [[Category: Huang CY]] |
Current revision
Urate oxidase from Thermobispora bispora in apo form
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