7f5f

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==SARS-CoV-2 ORF8 S84==
==SARS-CoV-2 ORF8 S84==
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<StructureSection load='7f5f' size='340' side='right'caption='[[7f5f]]' scene=''>
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<StructureSection load='7f5f' size='340' side='right'caption='[[7f5f]], [[Resolution|resolution]] 1.62&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7F5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7F5F FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7f5f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome_coronavirus_2 Severe acute respiratory syndrome coronavirus 2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7F5F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7F5F FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7f5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7f5f OCA], [https://pdbe.org/7f5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7f5f RCSB], [https://www.ebi.ac.uk/pdbsum/7f5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7f5f ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.62&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7f5f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7f5f OCA], [https://pdbe.org/7f5f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7f5f RCSB], [https://www.ebi.ac.uk/pdbsum/7f5f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7f5f ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/NS8_SARS2 NS8_SARS2] May play a role in host-virus interaction.
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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ORF8 is a viral immunoglobulin-like (Ig-like) domain protein encoded by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) RNA genome. It tends to evolve rapidly and interfere with immune responses. However, the structural characteristics of various coronavirus ORF8 proteins and their subsequent effects on biological functions remain unclear. Herein, we determined the crystal structures of SARS-CoV-2 ORF8 (S84) (one of the epidemic isoforms) and the bat coronavirus RaTG13 ORF8 variant at 1.62 A and 1.76 A resolution, respectively. Comparison of these ORF8 proteins demonstrates that the 62-77 residues in Ig-like domain of coronavirus ORF8 adopt different conformations. Combined with mutagenesis assays, the residue Cys20 of ORF8 is responsible for forming the covalent disulfide-linked dimer in crystal packing and in vitro biochemical conditions. Furthermore, immune cell-binding assays indicate that various ORF8 (SARS-CoV-2 ORF8 (L84), ORF8 (S84), and RaTG13 ORF8) proteins have different interaction capabilities with human CD14(+) monocytes in human peripheral blood. These results provide new insights into the specific characteristics of various coronavirus ORF8 and suggest that ORF8 variants may influence disease-related immune responses.
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Crystal Structures of Bat and Human Coronavirus ORF8 Protein Ig-Like Domain Provide Insights Into the Diversity of Immune Responses.,Chen X, Zhou Z, Huang C, Zhou Z, Kang S, Huang Z, Jiang G, Hong Z, Chen Q, Yang M, He S, Liu S, Chen J, Li K, Li X, Liao J, Chen J, Chen S Front Immunol. 2021 Dec 17;12:807134. doi: 10.3389/fimmu.2021.807134. eCollection, 2021. PMID:34975921<ref>PMID:34975921</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7f5f" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Severe acute respiratory syndrome coronavirus 2]]
[[Category: Chen S]]
[[Category: Chen S]]
[[Category: Chen X]]
[[Category: Chen X]]
[[Category: Zhou Z]]
[[Category: Zhou Z]]

Revision as of 17:09, 29 November 2023

SARS-CoV-2 ORF8 S84

PDB ID 7f5f

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