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| | <StructureSection load='5o3v' size='340' side='right'caption='[[5o3v]], [[Resolution|resolution]] 2.17Å' scene=''> | | <StructureSection load='5o3v' size='340' side='right'caption='[[5o3v]], [[Resolution|resolution]] 2.17Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5o3v]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Gypsophila_vaccaria Gypsophila vaccaria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O3V OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5O3V FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5o3v]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Gypsophila_vaccaria Gypsophila vaccaria]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5O3V OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5O3V FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.17Å</td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">Pcy1 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=39387 Gypsophila vaccaria])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5o3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o3v OCA], [http://pdbe.org/5o3v PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5o3v RCSB], [http://www.ebi.ac.uk/pdbsum/5o3v PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5o3v ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5o3v FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5o3v OCA], [https://pdbe.org/5o3v PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5o3v RCSB], [https://www.ebi.ac.uk/pdbsum/5o3v PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5o3v ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/R4P353_GYPVA R4P353_GYPVA] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | [[Category: Gypsophila vaccaria]] | | [[Category: Gypsophila vaccaria]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Bent, A F]] | + | [[Category: Bent AF]] |
| - | [[Category: Czekster, C M]] | + | [[Category: Czekster CM]] |
| - | [[Category: Ludewig, H]] | + | [[Category: Ludewig H]] |
| - | [[Category: Naismith, J H]] | + | [[Category: Naismith JH]] |
| - | [[Category: Beta-propeller]]
| + | |
| - | [[Category: Closed form]]
| + | |
| - | [[Category: Hydrolase]]
| + | |
| - | [[Category: Macrocyclase]]
| + | |
| - | [[Category: Peptidase]]
| + | |
| - | [[Category: Prolyl oligopeptidase]]
| + | |
| - | [[Category: Segetalin biosynthesis]]
| + | |
| Structural highlights
Function
R4P353_GYPVA
Publication Abstract from PubMed
Cyclic ribosomally derived peptides possess diverse bioactivities and are currently of major interest in drug development. However, it can be chemically challenging to synthesize these molecules, hindering the diversification and testing of cyclic peptide leads. Enzymes used in vitro offer a solution to this, however peptide macrocyclization remains the bottleneck. PCY1, involved in the biosynthesis of plant orbitides, belongs to the class of prolyl oligopeptidases and natively displays substrate promiscuity. PCY1 is a promising candidate for in vitro utilization but its substrates require an 11 to 16 residue C-terminal recognition tail. We have characterized PCY1 both kinetically and structurally with multiple substrate complexes revealing for the molecular basis of recognition and catalysis. Using these insights, we have identified a three residue C-terminal extension that replaces the natural recognition tail permitting PCY1 to operate on synthetic substrates. We demonstrate that PCY1 can macrocyclize a variety of substrates with this short tail, including unnatural amino acids and non-amino acids, highlighting PCY1's potential in biocatalysis.
Characterization of the fast and promiscuous macrocyclase from plant PCY1 enables the use of simple substrates.,Ludewig H, Czekster CM, Oueis E, Munday ES, Arshad M, Synowsky SA, Bent AF, Naismith JH ACS Chem Biol. 2018 Jan 29. doi: 10.1021/acschembio.8b00050. PMID:29377663[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Ludewig H, Czekster CM, Oueis E, Munday ES, Arshad M, Synowsky SA, Bent AF, Naismith JH. Characterization of the fast and promiscuous macrocyclase from plant PCY1 enables the use of simple substrates. ACS Chem Biol. 2018 Jan 29. doi: 10.1021/acschembio.8b00050. PMID:29377663 doi:http://dx.doi.org/10.1021/acschembio.8b00050
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