1dyz

From Proteopedia

(Difference between revisions)

Current revision

OXIDISED AZURIN II FROM ALCALIGENES XYLOSOXIDANS

Structural highlights

1dyz is a 1 chain structure with sequence from Achromobacter xylosoxidans. This structure supersedes the now removed PDB entry 1arn. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	X-ray diffraction, Resolution 1.75Å
Ligands:
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

AZUR2_ALCXX Transfers electrons from cytochrome c551 to cytochrome oxidase.

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

Crystallographic structures of oxidized and reduced forms of azurin II are reported at 1.75 A resolution. Data were collected using one crystal in each case and by translating the crystal after each oscillation range to minimize photoreduction. Very small differences are observed at the Cu site upon reduction and these cannot be determined with confidence at current resolution. A comparison with the three-dimensional EXAFS reveals a good correspondence for all the ligand distances except for Cu-His46, where a larger deviation of approximately 0.12-0.18 A is observed, indicating that this ligand is more tightly restrained in the crystallographic refinement at the current resolution.

Structures of oxidized and reduced azurin II from Alcaligenes xylosoxidans at 1.75 A resolution.,Dodd FE, Abraham ZH, Eady RR, Hasnain SS Acta Crystallogr D Biol Crystallogr. 2000 Jun;56(Pt 6):690-6. PMID:10818345^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Dodd FE, Abraham ZH, Eady RR, Hasnain SS. Structures of oxidized and reduced azurin II from Alcaligenes xylosoxidans at 1.75 A resolution. Acta Crystallogr D Biol Crystallogr. 2000 Jun;56(Pt 6):690-6. PMID:10818345

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1dyz"

@@ Line 3: / Line 3: @@
 <StructureSection load='1dyz' size='340' side='right'caption='[[1dyz]], [[Resolution|resolution]] 1.75&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1dyz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Alcaligenes_xylosoxidans Alcaligenes xylosoxidans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1arn 1arn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DYZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DYZ FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1dyz]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Achromobacter_xylosoxidans Achromobacter xylosoxidans]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1arn 1arn]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1DYZ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1DYZ FirstGlance]. <br>
-</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.75&#8491;</td></tr>
-<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1dz0|1dz0]]</div></td></tr>
+<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CU:COPPER+(II)+ION'>CU</scene></td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1dyz FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1dyz OCA], [https://pdbe.org/1dyz PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1dyz RCSB], [https://www.ebi.ac.uk/pdbsum/1dyz PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1dyz ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/AZUR2_ALCXX AZUR2_ALCXX]] Transfers electrons from cytochrome c551 to cytochrome oxidase.
+[https://www.uniprot.org/uniprot/AZUR2_ALCXX AZUR2_ALCXX] Transfers electrons from cytochrome c551 to cytochrome oxidase.
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 36: / Line 36: @@
 __TOC__
 </StructureSection>
-[[Category: Alcaligenes xylosoxidans]]
+[[Category: Achromobacter xylosoxidans]]
 [[Category: Large Structures]]
-[[Category: Abraham, Z H.L]]
+[[Category: Abraham ZHL]]
-[[Category: Dodd, F E]]
+[[Category: Dodd FE]]
-[[Category: Eady, R R]]
+[[Category: Eady RR]]
-[[Category: Hasnain, S S]]
+[[Category: Hasnain SS]]
-[[Category: Cupredoxin]]
-[[Category: Cuproprotein]]
-[[Category: Electron transport]]

1dyz

From Proteopedia

Current revision

OXIDISED AZURIN II FROM ALCALIGENES XYLOSOXIDANS

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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