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1sut

From Proteopedia

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NMR STUDY OF THE PROLINE REPEAT FROM TUS

Structural highlights

1sut is a 1 chain structure with sequence from Escherichia coli K-12. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

TUS_ECOLI Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence.

Publication Abstract from PubMed

The structure of a 22 amino acid peptide, TPPI [Nedved, M. L., Gottlieb, P. A., & Moe, G. R. (1994) Nucleic Acids Res. 22, 5024-5030], that is similar to the proline repeat segment of the replication arrest protein, Tus, has been determined by 1H NMR in 50% trifluroethanol. The structure is a novel left-handed helix having 5.56 residues per turn and a regular hydrogen bonding network that is limited to one side of the helix and contains a channel that runs down the helix axis. The latter feature gives the structure an overall pipe-like appearance; hence, the structure has been designated a proline pipe helix. The Tus proline pipe is also amphiphilic with one side consisting of proline and other nonpolar residues while the other side contains mostly basic and other polar residues. Tus and several other proteins that contain a similar proline repeat sequence are DNA binding proteins. It is shown here that the proline pipe helix of TPPI can be accommodated within the major grove of B-form DNA in a manner that positions nearly all of the basic residues near phosphate groups in the DNA backbone. The proline pipe helical motif may be a structural element of many other proteins including integral membrane receptor proteins.

Proline pipe helix: structure of the tus proline repeat determined by 1H NMR.,Butcher DJ, Nedved ML, Neiss TG, Moe GR Biochemistry. 1996 Jan 23;35(3):698-703. PMID:8547250^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Butcher DJ, Nedved ML, Neiss TG, Moe GR. Proline pipe helix: structure of the tus proline repeat determined by 1H NMR. Biochemistry. 1996 Jan 23;35(3):698-703. PMID:8547250 doi:http://dx.doi.org/10.1021/bi952419l

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1sut"

@@ Line 1: / Line 1: @@
 ==NMR STUDY OF THE PROLINE REPEAT FROM TUS==
-<StructureSection load='1sut' size='340' side='right'caption='[[1sut]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+<StructureSection load='1sut' size='340' side='right'caption='[[1sut]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SUT FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1sut]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1SUT OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1SUT FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [https://pdbe.org/1sut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [https://www.ebi.ac.uk/pdbsum/1sut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sut ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1sut FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1sut OCA], [https://pdbe.org/1sut PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1sut RCSB], [https://www.ebi.ac.uk/pdbsum/1sut PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1sut ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/TUS_ECOLI TUS_ECOLI]] Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence.
+[https://www.uniprot.org/uniprot/TUS_ECOLI TUS_ECOLI] Trans-acting protein required for termination of DNA replication. Binds to DNA replication terminator sequences (terA to terF) to prevent the passage of replication forks. The termination efficiency will be affected by the affinity of this protein for the terminator sequence.
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 21: / Line 22: @@
 __TOC__
 </StructureSection>
+[[Category: Escherichia coli K-12]]
 [[Category: Large Structures]]
-[[Category: Butcher, D J]]
+[[Category: Butcher DJ]]
-[[Category: Moe, G R]]
+[[Category: Moe GR]]
-[[Category: Nedved, M L]]
+[[Category: Nedved ML]]
-[[Category: Neiss, T G]]
+[[Category: Neiss TG]]
-[[Category: Dna binding protein]]
-[[Category: Dna-binding protein]]

1sut

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Current revision

NMR STUDY OF THE PROLINE REPEAT FROM TUS

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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