1yo4

From Proteopedia

(Difference between revisions)

Revision as of 09:31, 6 December 2023

Solution Structure of the SARS Coronavirus ORF 7a coded X4 protein

Structural highlights

1yo4 is a 1 chain structure with sequence from Severe acute respiratory syndrome-related coronavirus. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

NS7A_SARS Plays a role as antagonist of host tetherin (BST2), disrupting its antiviral effect. Acts by binding to BST2 thereby interfering with its glycosylation. May suppress small interfering RNA (siRNA). May bind to host ITGAL, thereby playing a role in attachment or modulation of leukocytes.^[1] ^[2] ^[3] ^[4]

Publication Abstract from PubMed

The SARS related Coronavirus genome contains a variety of novel accessory genes. One of these, called ORF7a or ORF8, code for a protein, known as 7a, U122 or X4. We set out to determine the three-dimensional structure of the soluble ectodomain of this type-I transmembrane protein by nuclear magnetic resonance spectroscopy. The fold of the protein is the first member of a further variation of the immunoglobulin like beta-sandwich fold. Because X4 does not reveal significant sequence homologies to proteins in the data bases, we carried out a structure based similarity search for proteins with known function. High structural similarity to Dl domains of ICAM-1 and ICAM-2, and common features in amino acid sequence between X4 and ICAM-1, suggest X4 to possess binding activity for the alpha(L) integrin I domain of LFA-1. Further, based on this structure based prediction, potential functions of X4 in virus replication and pathogenesis are discussed.

Solution structure of the X4 protein coded by the SARS related coronavirus reveals an immunoglobulin like fold and suggests a binding activity to integrin I domains.,Hanel K, Stangler T, Stoldt M, Willbold D J Biomed Sci. 2006 May;13(3):281-93. Epub 2005 Nov 23. PMID:16328780^[5]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Tan YJ, Fielding BC, Goh PY, Shen S, Tan TH, Lim SG, Hong W. Overexpression of 7a, a protein specifically encoded by the severe acute respiratory syndrome coronavirus, induces apoptosis via a caspase-dependent pathway. J Virol. 2004 Dec;78(24):14043-7. PMID:15564512 doi:http://dx.doi.org/10.1128/JVI.78.24.14043-14047.2004
↑ Hänel K, Willbold D. SARS-CoV accessory protein 7a directly interacts with human LFA-1. Biol Chem. 2007 Dec;388(12):1325-32. PMID:18020948 doi:10.1515/BC.2007.157
↑ Karjee S, Minhas A, Sood V, Ponia SS, Banerjea AC, Chow VT, Mukherjee SK, Lal SK. The 7a accessory protein of severe acute respiratory syndrome coronavirus acts as an RNA silencing suppressor. J Virol. 2010 Oct;84(19):10395-401. PMID:20631126 doi:10.1128/JVI.00748-10
↑ Taylor JK, Coleman CM, Postel S, Sisk JM, Bernbaum JG, Venkataraman T, Sundberg EJ, Frieman MB. Severe Acute Respiratory Syndrome Coronavirus ORF7a Inhibits Bone Marrow Stromal Antigen 2 Virion Tethering through a Novel Mechanism of Glycosylation Interference. J Virol. 2015 Dec;89(23):11820-33. PMID:26378163 doi:10.1128/JVI.02274-15
↑ Hanel K, Stangler T, Stoldt M, Willbold D. Solution structure of the X4 protein coded by the SARS related coronavirus reveals an immunoglobulin like fold and suggests a binding activity to integrin I domains. J Biomed Sci. 2006 May;13(3):281-93. Epub 2005 Nov 23. PMID:16328780 doi:http://dx.doi.org/10.1007/s11373-005-9043-9

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1yo4"

@@ Line 1: / Line 1: @@
 ==Solution Structure of the SARS Coronavirus ORF 7a coded X4 protein==
-<StructureSection load='1yo4' size='340' side='right'caption='[[1yo4]], [[NMR_Ensembles_of_Models | 10 NMR models]]' scene=''>
+<StructureSection load='1yo4' size='340' side='right'caption='[[1yo4]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1yo4]] is a 1 chain structure. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YO4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YO4 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1yo4]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Severe_acute_respiratory_syndrome-related_coronavirus Severe acute respiratory syndrome-related coronavirus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1YO4 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1YO4 FirstGlance]. <br>
-</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yo4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yo4 OCA], [https://pdbe.org/1yo4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yo4 RCSB], [https://www.ebi.ac.uk/pdbsum/1yo4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yo4 ProSAT]</span></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
+<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1yo4 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1yo4 OCA], [https://pdbe.org/1yo4 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1yo4 RCSB], [https://www.ebi.ac.uk/pdbsum/1yo4 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1yo4 ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/NS7A_CVHSA NS7A_CVHSA]] Non-structural protein which is dispensable for virus replication in cell culture.<ref>PMID:15564512</ref>
+[https://www.uniprot.org/uniprot/NS7A_SARS NS7A_SARS] Plays a role as antagonist of host tetherin (BST2), disrupting its antiviral effect. Acts by binding to BST2 thereby interfering with its glycosylation. May suppress small interfering RNA (siRNA). May bind to host ITGAL, thereby playing a role in attachment or modulation of leukocytes.<ref>PMID:15564512</ref> <ref>PMID:18020948</ref> <ref>PMID:20631126</ref> <ref>PMID:26378163</ref>
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 22: / Line 23: @@
 </StructureSection>
 [[Category: Large Structures]]
-[[Category: Haenel, K]]
+[[Category: Severe acute respiratory syndrome-related coronavirus]]
-[[Category: Stangler, T]]
+[[Category: Haenel K]]
-[[Category: Stoldt, M]]
+[[Category: Stangler T]]
-[[Category: Willbold, D]]
+[[Category: Stoldt M]]
-[[Category: Beta-sandwich]]
+[[Category: Willbold D]]
-[[Category: Immunoglobulin-like domain]]
-[[Category: Viral protein]]

1yo4

From Proteopedia

Revision as of 09:31, 6 December 2023

Solution Structure of the SARS Coronavirus ORF 7a coded X4 protein

Structural highlights

Function

Publication Abstract from PubMed

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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