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Superoxide dismutase 3D structures

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Line 19: Line 19:
**[[2jlp]], [[2v0a]], [[2c9v]], [[2c9u]], [[2c9s]], [[1pu0]], [[1hl5]], [[1sos]], [[1spd]], [[3kh3]], [[3kh4]], [[3re0]], [[3t5w]], [[4b3e]], [[4ff9]], [[2mp3]]- hSOD +Zn+Cu<br />
**[[2jlp]], [[2v0a]], [[2c9v]], [[2c9u]], [[2c9s]], [[1pu0]], [[1hl5]], [[1sos]], [[1spd]], [[3kh3]], [[3kh4]], [[3re0]], [[3t5w]], [[4b3e]], [[4ff9]], [[2mp3]]- hSOD +Zn+Cu<br />
-
**[[2wko]], [[3gzo]], [[2zkw]], [[2zkx]], [[2zky]], [[3cqp]], [[3cqq]], [[2vr6]], [[2vr7]], [[2vr8]], [[2gbt]], [[2gbv]], [[1uxl]], [[1uxm]], [[1ptz]], [[1ozu]], [[1n18]], [[1n19]], [[1fun]], [[1mfm]], [[1azv]], [[2wyt]], [[2xjk]], [[4mcm]], [[4oh2]], [[4xcr]], [[5k02]], [[6foi]], [[6dtk]] – hSOD (mutant) +Zn+Cu<br />
+
**[[2wko]], [[3gzo]], [[2zkw]], [[2zkx]], [[2zky]], [[3cqp]], [[3cqq]], [[2vr6]], [[2vr7]], [[2vr8]], [[2gbt]], [[2gbv]], [[1uxl]], [[1uxm]], [[1ptz]], [[1ozu]], [[1n18]], [[1n19]], [[1fun]], [[1mfm]], [[1azv]], [[2wyt]], [[2xjk]], [[4mcm]], [[4oh2]], [[4xcr]], [[5k02]], [[6foi]], [[6dtk]], [[7fb6]], [[7t8e]] – hSOD (mutant) +Zn+Cu<br />
**[[1l3n]], [[1dsw]], [[1ba9]], [[2lu5]] – hSOD (mutant) +Zn+Cu - NMR<br />
**[[1l3n]], [[1dsw]], [[1ba9]], [[2lu5]] – hSOD (mutant) +Zn+Cu - NMR<br />
 +
**[[7vzf]] – hSOD + Zn+Cu fiber – Cryo EM<br />
 +
**[[8gsq]] – hSOD + drug + Zn+Cu<br />
**[[2wyz]] - hSOD (mutant) +Zn+Cu+UMP<br />
**[[2wyz]] - hSOD (mutant) +Zn+Cu+UMP<br />
**[[2wz0]] - hSOD (mutant) +Zn+Cu+aniline<br />
**[[2wz0]] - hSOD (mutant) +Zn+Cu+aniline<br />
Line 32: Line 34:
**[[6fon]] - hSOD +Zn+Cu + copper chaperone for SOD<br />
**[[6fon]] - hSOD +Zn+Cu + copper chaperone for SOD<br />
**[[6fp6]], [[6fol]] - hSOD (mutant) +Zn+Cu + copper chaperone for SOD<br />
**[[6fp6]], [[6fol]] - hSOD (mutant) +Zn+Cu + copper chaperone for SOD<br />
-
**[[2z7u]], [[2z7w]], [[2z7y]], [[2z7z]], [[2aeo]], [[1q0e]], [[1e9p]], [[1e9q]], [[1cb4]], [[1cbj]], [[1sxn]], [[1sxa]], [[1sxb]], [[1sxc]], [[1spd]], [[1sda]], [[3sod]], [[2sod]], [[2zow]], [[3hw7]] – cSOD+Zn+Cu - bovine<br />
+
**[[7nxx]] – hSOD+Zn+Cu + nanobody<br />
 +
**[[2z7u]], [[2z7w]], [[2z7y]], [[2z7z]], [[2aeo]], [[1q0e]], [[1e9p]], [[1e9q]], [[1cb4]], [[1cbj]], [[1sxn]], [[1sxa]], [[1sxb]], [[1sxc]], [[1spd]], [[1sda]], [[3sod]], [[2sod]], [[2zow]], [[3hw7]], [[8iq0]], [[8iq1]] – cSOD+Zn+Cu - bovine<br />
**[[1sxs]] - bSOD +Zn+Cu+SCN<br />
**[[1sxs]] - bSOD +Zn+Cu+SCN<br />
**[[1sxz]] - bSOD +Zn+Cu+N3<br />
**[[1sxz]] - bSOD +Zn+Cu+N3<br />
 +
**[[7wwt]] – dSOD +Zn+Cu - dog<br />
 +
**[[7wwy]], [[7wx0]], [[7wx1]] – dSOD (mutant) +Zn+Cu <br />
**[[3l9y]] - smSOD +Zn+Cu - Silkworm<br />
**[[3l9y]] - smSOD +Zn+Cu - Silkworm<br />
**[[3mnd]] – SOD + Zn + Cu – Pig tapeworm<br />
**[[3mnd]] – SOD + Zn + Cu – Pig tapeworm<br />
Line 68: Line 73:
**[[7b4p]] - BbSOD + Cu + Zn – ''Bacteroidetes bacterium''<br />
**[[7b4p]] - BbSOD + Cu + Zn – ''Bacteroidetes bacterium''<br />
**[[6zs1]] – CtSOD + Zn + Cu – ''Chaetomium thermophilum''<br />
**[[6zs1]] – CtSOD + Zn + Cu – ''Chaetomium thermophilum''<br />
 +
**[[7ypp]] – RvSOD +Zn+Cu – ''Ramazzottius varieornatus''<br />
 +
**[[7ypr]] – RvSOD (mutant) +Zn+Cu <br />
*Mn-superoxide dismutase
*Mn-superoxide dismutase
Line 94: Line 101:
**[[4c7u]] - SOD +Mn – ''Arabidopsis thaliana''<br />
**[[4c7u]] - SOD +Mn – ''Arabidopsis thaliana''<br />
**[[5a9g]] - SOD +Mn – ''Sphingobacterium''<br />
**[[5a9g]] - SOD +Mn – ''Sphingobacterium''<br />
-
**[[5x2j]] - SOD (mutant) +Mn - ''Staphylococcus equorum''<br />
+
**[[5x2j], [[7ddw]], [[7w6w]], [[7wnk]], [[7wnl]] - SOD (mutant) +Mn - ''Staphylococcus equorum''<br />
**[[5n57]], [[5n56]] - SaSOD +Mn - ''Staphylococcus aureus''<br />
**[[5n57]], [[5n56]] - SaSOD +Mn - ''Staphylococcus aureus''<br />
**[[6ex5]], [[6qv8]], [[6qv9]] - SaSOD (mutant) +Mn <br />
**[[6ex5]], [[6qv8]], [[6qv9]] - SaSOD (mutant) +Mn <br />
Line 150: Line 157:
**[[7azq]], [[7azr]] - SOD + Fe – ''Rhodobacter capsulatus''<br />
**[[7azq]], [[7azr]] - SOD + Fe – ''Rhodobacter capsulatus''<br />
**[[7sbh]] - SOD + Fe + FMN – ''Acinetobacter'' <br />
**[[7sbh]] - SOD + Fe + FMN – ''Acinetobacter'' <br />
 +
**[[8avl]] - BfSOD+Fe – ''Bacterioides fragilis''<br />
 +
**[[8avm]] - BfSOD (mutant)+Fe <br />
 +
**[[8avk]], [[8avn]] – SOD+ Fe – ''Candidatus wolfebacteria''<br />
 +
**[[8bhx]] – SOD+ Fe – ''Thermobifida fusca''<br />
*Fe-Mn-superoxide dismutase
*Fe-Mn-superoxide dismutase
Line 172: Line 183:
**[[2af2]], [[1kmg]] - hSOD (mutant) +Zn – NMR<br />
**[[2af2]], [[1kmg]] - hSOD (mutant) +Zn – NMR<br />
**[[5u9m]] – hSOD (mutant) + SOD Cu chaperone + Zn<br />
**[[5u9m]] – hSOD (mutant) + SOD Cu chaperone + Zn<br />
 +
**[[7t8f]], [[7t8g]], [[7t8h]] – hSOD (mutant) + drug + Zn<br />
**[[6a9o]] – hSOD + inhibitor + Zn<br />
**[[6a9o]] – hSOD + inhibitor + Zn<br />
**[[5ytu]] – hSOD + isopernaline + Zn<br />
**[[5ytu]] – hSOD + isopernaline + Zn<br />
Line 196: Line 208:
**[[4n3t]], [[4n3u]] – CaSOD + Cu <br />
**[[4n3t]], [[4n3u]] – CaSOD + Cu <br />
**[[5kbk]], [[5kbl]], [[5kbm]] – CaSOD (mutant) + Cu <br />
**[[5kbk]], [[5kbl]], [[5kbm]] – CaSOD (mutant) + Cu <br />
 +
**[[8aca]] - DrSOD +Cu – Cryo EM<br />
**[[6adq]], [[7re5]], [[7rh6]], [[7rh7]] - SOD +Cu in respiratory complex – ''Mycobacterium smegmatis'' – Cryo EM<br />
**[[6adq]], [[7re5]], [[7rh6]], [[7rh7]] - SOD +Cu in respiratory complex – ''Mycobacterium smegmatis'' – Cryo EM<br />
}}
}}
[[Category:Topic Page]]
[[Category:Topic Page]]

Revision as of 10:34, 10 December 2023

3D Structures of SOD

Updated on 10-December-2023 {{#tree:id=OrganizedByTopic|openlevels=0|

  • Metal-free apo superoxide dismutase
  • Cu-Zn-superoxide dismutase
  • Mn-superoxide dismutase
  • Fe-superoxide dismutase
    • 3js4 – SOD+Fe – Anaplasma phagocytuphilum
    • 1mmm, 1isa, 1isb, 1isc – EcSOD+Fe
    • 2bkb, 2nyb, 1za5 – EcSOD (mutant)+Fe
    • 1y67 – DrSOD+Fe
    • 3esf – SOD (mutant)+Fe – Trypanosoma brucei
    • 2gpc, 4dvh – SOD+Fe – Trypanosoma cruzi
    • 3h1s – SOD+Fe – Francisella tularensis
    • 2w7w – SOD+Fe – Aliivibrio salmonicida
    • 3cei – SOD+Fe – Helicobacter pylori
    • 2goj, 2bpi – PfSOD+Fe – Plasmodium falciparum
    • 2awp – SOD+ion – Plasmodium knowlesi
    • 2cw2, 2cw3 – SOD+Fe – Perkinsus marinus
    • 1wb7, 1wb8 – SOD (mutant)+Fe – Sulfolobus solfataricus
    • 1unf – SOD+Fe – Vigna unguiculata
    • 1uer, 1ues, 1qnn – SOD+Fe – Porphyromonas gingivalis
    • 1my6 – SOD+Fe – Thermosynechococcus elongates
    • 1ma1 – SOD+Fe – Methanothermobacter thermautotrophicus
    • 1ids – MtSOD+Fe - Mycobacterium tuberculosisbr />
    • 1gn2, 1gn3, 1gn4, 1gn6 – MtSOD (mutant)+Fe
    • 1dt0, 3sdp – SOD+Fe – Pseudomonas putida
    • 1b06 – SOD+Fe – Sulfolobus acidocaldarius
    • 1bs3 – PfSOD+Fe+F
    • 1bsm, 1bt8 – PfSOD+Fe
    • 1avm – PfSOD+Fe+N3
    • 1coj – SOD+Fe – Aquifex pyrophilus
    • 3lio, 3ljt, 3lj9, 3ljf, 4l2d – PhSOD+Fe - Pseudoalteromonas haloplanktis
    • 4l2a, 4l2b, 4l2c - PhSOD (mutant)+Fe
    • 3ak3 - ApSOD+Fe
    • 3tqj – SOD + Fe – Coxiella burneti
    • 4f2n - SOD + Fe – Leishmania major
    • 3tjt - CdSOD + Fe
    • 4jyy - CdSOD + Fe + N3
    • 4ffk – SOD + Fe – Acidilobus saccharovorans
    • 4yet – BbSOD+ Fe – Babesia bovis
    • 6jov – SOD+ Fe – synthetic
    • 6j55 – SOD+ Fe – Acanthamoeba castellanii
    • 6ex4, 6ex3 - SaSOD + Fe
    • 7azq, 7azr - SOD + Fe – Rhodobacter capsulatus
    • 7sbh - SOD + Fe + FMN – Acinetobacter
    • 8avl - BfSOD+Fe – Bacterioides fragilis
    • 8avm - BfSOD (mutant)+Fe
    • 8avk, 8avn – SOD+ Fe – Candidatus wolfebacteria
    • 8bhx – SOD+ Fe – Thermobifida fusca
  • Fe-Mn-superoxide dismutase
    • 4yio, 4yip - SOD + Fe + Mn – Streptococcus thermophilus<br /
  • Co-superoxide dismutase
  • Ni-superoxide dismutase
  • Zn-superoxide dismutase
  • Cu-superoxide dismutase

}}

Proteopedia Page Contributors and Editors (what is this?)

Michal Harel

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