1gvm

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:08, 13 December 2023) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1gvm' size='340' side='right'caption='[[1gvm]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
<StructureSection load='1gvm' size='340' side='right'caption='[[1gvm]], [[Resolution|resolution]] 2.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1gvm]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/"diplococcus_pneumoniae"_(klein_1884)_weichselbaum_1886 "diplococcus pneumoniae" (klein 1884) weichselbaum 1886]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GVM FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1gvm]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptococcus_pneumoniae Streptococcus pneumoniae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1GVM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1GVM FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CHT:CHOLINE+ION'>CHT</scene>, <scene name='pdbligand=DDQ:DECYLAMINE-N,N-DIMETHYL-N-OXIDE'>DDQ</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1h8g|1h8g]], [[1hcx|1hcx]]</div></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CHT:CHOLINE+ION'>CHT</scene>, <scene name='pdbligand=DDQ:DECYLAMINE-N,N-DIMETHYL-N-OXIDE'>DDQ</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/N-acetylmuramoyl-L-alanine_amidase N-acetylmuramoyl-L-alanine amidase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.5.1.28 3.5.1.28] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gvm OCA], [https://pdbe.org/1gvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gvm RCSB], [https://www.ebi.ac.uk/pdbsum/1gvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gvm ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1gvm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1gvm OCA], [https://pdbe.org/1gvm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1gvm RCSB], [https://www.ebi.ac.uk/pdbsum/1gvm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1gvm ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/ALYS_STRPN ALYS_STRPN] Autolysins are involved in some important biological processes such as cell separation, cell-wall turnover, competence for genetic transformation, formation of the flagella and sporulation. Autolysin strictly depends on the presence of choline-containing cell walls for activity.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 33: Line 34:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: N-acetylmuramoyl-L-alanine amidase]]
+
[[Category: Streptococcus pneumoniae]]
-
[[Category: Fernandez-Tornero, C]]
+
[[Category: Fernandez-Tornero C]]
-
[[Category: Garcia, E]]
+
[[Category: Garcia E]]
-
[[Category: Gimenez-Gallego, G]]
+
[[Category: Gimenez-Gallego G]]
-
[[Category: Lopez, R]]
+
[[Category: Lopez R]]
-
[[Category: Romero, A]]
+
[[Category: Romero A]]
-
[[Category: Cell wall attachment]]
+
-
[[Category: Choline-binding domain]]
+

Current revision

CHOLINE BINDING DOMAIN OF THE MAJOR AUTOLYSIN (C-LYTA) FROM STREPTOCOCCUS PNEUMONIAE

PDB ID 1gvm

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools