This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


1ovv

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 1: Line 1:
[[Image:1ovv.jpg|left|200px]]
[[Image:1ovv.jpg|left|200px]]
-
{{Structure
+
<!--
-
|PDB= 1ovv |SIZE=350|CAPTION= <scene name='initialview01'>1ovv</scene>, resolution 2.90&Aring;
+
The line below this paragraph, containing "STRUCTURE_1ovv", creates the "Structure Box" on the page.
-
|SITE=
+
You may change the PDB parameter (which sets the PDB file loaded into the applet)
-
|LIGAND= <scene name='pdbligand=ACE:ACETYL+GROUP'>ACE</scene>, <scene name='pdbligand=CO:COBALT+(II)+ION'>CO</scene>, <scene name='pdbligand=NH2:AMINO+GROUP'>NH2</scene>
+
or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
-
|ACTIVITY=
+
or leave the SCENE parameter empty for the default display.
-
|GENE=
+
-->
-
|DOMAIN=
+
{{STRUCTURE_1ovv| PDB=1ovv | SCENE= }}
-
|RELATEDENTRY=[[1ec5|1ec5]], [[1jm0|1jm0]], [[1jmb|1jmb]], [[1lt1|1lt1]], [[1ovr|1OVR]], [[1ovu|1OVU]]
+
-
|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1ovv FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1ovv OCA], [http://www.ebi.ac.uk/pdbsum/1ovv PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1ovv RCSB]</span>
+
-
}}
+
'''CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II)'''
'''CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II)'''
Line 19: Line 16:
==About this Structure==
==About this Structure==
-
1OVV is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OVV OCA].
+
Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1OVV OCA].
==Reference==
==Reference==
Phasing protein structures using the group-subgroup relation., Di Costanzo L, Forneris F, Geremia S, Randaccio L, Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1435-9. Epub 2003, Jul 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12876346 12876346]
Phasing protein structures using the group-subgroup relation., Di Costanzo L, Forneris F, Geremia S, Randaccio L, Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1435-9. Epub 2003, Jul 23. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/12876346 12876346]
-
[[Category: Protein complex]]
 
[[Category: Costanzo, L Di.]]
[[Category: Costanzo, L Di.]]
[[Category: Geremia, S.]]
[[Category: Geremia, S.]]
-
[[Category: alpha-helical bundle]]
+
[[Category: Alpha-helical bundle]]
-
[[Category: protein design]]
+
[[Category: Protein design]]
-
 
+
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 04:20:23 2008''
-
''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:51:02 2008''
+

Revision as of 01:20, 3 May 2008

Template:STRUCTURE 1ovv

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II)


Overview

Diffraction data from two non-isomorphous crystals (forms 1 and 2) of an artificial protein with a four-helix bundle motif, di-Co(II)-DF1-L13A, have been collected using synchrotron radiation. The phase of form 1 has been assigned using the group and minimal non-isomorphic supergroup relation between the space group of the previously determined di-Mn(II)-DF1-L13G structure and the space group of this form. This unconventional method of solving the phase problem has also been tested with form 2 using a reverse relation. The structure of the latter form has been solved using the group and maximal non-isomorphic subgroup relation with the space group of form 2 of the analogous dimanganese protein. This application has shown that this phasing method can be used for solving the protein structures of polymorphic crystals as an alternative to the molecular-replacement method.

About this Structure

Full crystallographic information is available from OCA.

Reference

Phasing protein structures using the group-subgroup relation., Di Costanzo L, Forneris F, Geremia S, Randaccio L, Acta Crystallogr D Biol Crystallogr. 2003 Aug;59(Pt 8):1435-9. Epub 2003, Jul 23. PMID:12876346 Page seeded by OCA on Sat May 3 04:20:23 2008

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools