2vd5
From Proteopedia
(Difference between revisions)
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<StructureSection load='2vd5' size='340' side='right'caption='[[2vd5]], [[Resolution|resolution]] 2.80Å' scene=''> | <StructureSection load='2vd5' size='340' side='right'caption='[[2vd5]], [[Resolution|resolution]] 2.80Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[2vd5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2vd5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VD5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VD5 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BI8:3-[1-(3-AMINOPROPYL)-1H-INDOL-3-YL]-4-(1-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE'>BI8</scene | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.8Å</td></tr> |
- | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BI8:3-[1-(3-AMINOPROPYL)-1H-INDOL-3-YL]-4-(1-METHYL-1H-INDOL-3-YL)-1H-PYRROLE-2,5-DIONE'>BI8</scene></td></tr> | |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vd5 OCA], [https://pdbe.org/2vd5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vd5 RCSB], [https://www.ebi.ac.uk/pdbsum/2vd5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vd5 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vd5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vd5 OCA], [https://pdbe.org/2vd5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vd5 RCSB], [https://www.ebi.ac.uk/pdbsum/2vd5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vd5 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Disease == | ||
+ | [https://www.uniprot.org/uniprot/DMPK_HUMAN DMPK_HUMAN] Defects in DMPK are the cause of dystrophia myotonica type 1 (DM1) [MIM:[https://omim.org/entry/160900 160900]; also known as Steinert disease. A muscular disorder characterized by myotonia, muscle wasting in the distal extremities, cataract, hypogonadism, defective endocrine functions, male baldness and cardiac arrhythmias. Note=The causative mutation is a CTG expansion in the 3'-UTR of the DMPK gene. A length exceeding 50 CTG repeats is pathogenic, while normal individuals have 5 to 37 repeats. Intermediate alleles with 35-49 triplets are not disease-causing but show instability in intergenerational transmissions. Disease severity varies with the number of repeats: mildly affected persons have 50 to 150 repeats, patients with classic DM have 100 to 1,000 repeats, and those with congenital onset can have more than 2,000 repeats.<ref>PMID:1546326</ref> <ref>PMID:1310900</ref> <ref>PMID:1302022</ref> <ref>PMID:19514047</ref> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/DMPK_HUMAN DMPK_HUMAN] Non-receptor serine/threonine protein kinase which is necessary for the maintenance of skeletal muscle structure and function. May play a role in myocyte differentiation and survival by regulating the integrity of the nuclear envelope and the expression of muscle-specific genes. May also phosphorylate PPP1R12A and inhibit the myosin phosphatase activity to regulate myosin phosphorylation. Also critical to the modulation of cardiac contractility and to the maintenance of proper cardiac conduction activity probably through the regulation of cellular calcium homeostasis. Phosphorylates PLN, a regulator of calcium pumps and may regulate sarcoplasmic reticulum calcium uptake in myocytes. May also phosphorylate FXYD1/PLM which is able to induce chloride currents. May also play a role in synaptic plasticity.<ref>PMID:10913253</ref> <ref>PMID:10811636</ref> <ref>PMID:11287000</ref> <ref>PMID:15598648</ref> <ref>PMID:21457715</ref> <ref>PMID:21949239</ref> | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
- | [[Category: | + | [[Category: Homo sapiens]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | + | [[Category: Amos A]] | |
- | [[Category: Amos | + | [[Category: Arrowsmith CH]] |
- | [[Category: Arrowsmith | + | [[Category: Bullock A]] |
- | [[Category: Bullock | + | [[Category: Bunkoczi G]] |
- | [[Category: Bunkoczi | + | [[Category: Edwards A]] |
- | + | [[Category: Elkins J]] | |
- | [[Category: Edwards | + | [[Category: Fedorov O]] |
- | [[Category: Elkins | + | [[Category: Filippakopoulos P]] |
- | [[Category: Fedorov | + | [[Category: Guo K]] |
- | [[Category: Filippakopoulos | + | [[Category: Knapp S]] |
- | [[Category: Guo | + | [[Category: Niesen F]] |
- | [[Category: Knapp | + | [[Category: Pike ACW]] |
- | [[Category: Niesen | + | [[Category: Pilka ES]] |
- | [[Category: Pike | + | [[Category: Sundstrom M]] |
- | [[Category: Pilka | + | [[Category: Ugochukwu E]] |
- | [[Category: Sundstrom | + | [[Category: Umeano C]] |
- | [[Category: Ugochukwu | + | [[Category: Weigelt J]] |
- | [[Category: Umeano | + | [[Category: Von Delft F]] |
- | [[Category: Weigelt | + | |
- | [[Category: | + | |
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Revision as of 15:16, 13 December 2023
Structure of Human Myotonic Dystrophy Protein Kinase in Complex with the Bisindoylmaleide inhibitor BIM VIII
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Categories: Homo sapiens | Large Structures | Amos A | Arrowsmith CH | Bullock A | Bunkoczi G | Edwards A | Elkins J | Fedorov O | Filippakopoulos P | Guo K | Knapp S | Niesen F | Pike ACW | Pilka ES | Sundstrom M | Ugochukwu E | Umeano C | Weigelt J | Von Delft F