2vtb

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Current revision (15:31, 13 December 2023) (edit) (undo)
 
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<StructureSection load='2vtb' size='340' side='right'caption='[[2vtb]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
<StructureSection load='2vtb' size='340' side='right'caption='[[2vtb]], [[Resolution|resolution]] 2.01&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2vtb]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Arath Arath]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VTB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VTB FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2vtb]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Arabidopsis_thaliana Arabidopsis thaliana] and [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2VTB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2VTB FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MHF:5,10-METHENYL-6,7,8-TRIHYDROFOLIC+ACID'>MHF</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.01&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=TCP:5-METHYLTHYMIDINE'>TCP</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=MHF:5,10-METHENYL-6,7,8-TRIHYDROFOLIC+ACID'>MHF</scene>, <scene name='pdbligand=TCP:5-METHYLTHYMIDINE'>TCP</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Deoxyribodipyrimidine_photo-lyase Deoxyribodipyrimidine photo-lyase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.99.3 4.1.99.3] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vtb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vtb OCA], [https://pdbe.org/2vtb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vtb RCSB], [https://www.ebi.ac.uk/pdbsum/2vtb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vtb ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2vtb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2vtb OCA], [https://pdbe.org/2vtb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2vtb RCSB], [https://www.ebi.ac.uk/pdbsum/2vtb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2vtb ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/CRYD_ARATH CRYD_ARATH]] May have a photoreceptor function. Binds ss- and ds-DNA in a sequence non-specific manner. Has a photolyase activity specific for cyclobutane pyrimidine dimers in ssDNA.<ref>PMID:17062752</ref>
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[https://www.uniprot.org/uniprot/CRYD_ARATH CRYD_ARATH] May have a photoreceptor function. Binds ss- and ds-DNA in a sequence non-specific manner. Has a photolyase activity specific for cyclobutane pyrimidine dimers in ssDNA.<ref>PMID:17062752</ref>
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Arath]]
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[[Category: Arabidopsis thaliana]]
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[[Category: Deoxyribodipyrimidine photo-lyase]]
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[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Batschauer, A]]
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[[Category: Batschauer A]]
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[[Category: Carell, T]]
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[[Category: Carell T]]
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[[Category: Essen, L O]]
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[[Category: Essen L-O]]
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[[Category: Hennecke, U]]
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[[Category: Hennecke U]]
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[[Category: Klar, T]]
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[[Category: Klar T]]
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[[Category: Pokorny, R]]
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[[Category: Pokorny R]]
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[[Category: Chloroplast]]
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[[Category: Chromophore]]
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[[Category: Cryptochrome]]
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[[Category: Cyclobutane-pyrimidine dimer]]
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[[Category: Dna]]
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[[Category: Dna-binding]]
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[[Category: Fad]]
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[[Category: Flavin adenine dinucleotide]]
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[[Category: Flavoprotein]]
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[[Category: Lyase dna complex]]
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[[Category: Lyase-dna complex]]
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[[Category: Mitochondrion]]
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[[Category: Photolyase]]
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[[Category: Single-stranded dna]]
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[[Category: Transit peptide]]
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Current revision

Structure of cryptochrome 3 - DNA complex

PDB ID 2vtb

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Proteopedia Page Contributors and Editors (what is this?)

OCA

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