2wfb
From Proteopedia
(Difference between revisions)
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<StructureSection load='2wfb' size='340' side='right'caption='[[2wfb]], [[Resolution|resolution]] 2.00Å' scene=''> | <StructureSection load='2wfb' size='340' side='right'caption='[[2wfb]], [[Resolution|resolution]] 2.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[2wfb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[2wfb]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Megalodesulfovibrio_gigas Megalodesulfovibrio gigas]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2WFB OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2WFB FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=ACT:ACETATE+ION'>ACT</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wfb OCA], [https://pdbe.org/2wfb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wfb RCSB], [https://www.ebi.ac.uk/pdbsum/2wfb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wfb ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2wfb FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2wfb OCA], [https://pdbe.org/2wfb PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2wfb RCSB], [https://www.ebi.ac.uk/pdbsum/2wfb PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2wfb ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q5DUA6_MEGGA Q5DUA6_MEGGA] | ||
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wfb ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=2wfb ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | The orange-coloured protein (ORP) from Desulfovibrio gigas is a 12 kDa protein that contains a novel mixed-metal sulfide cluster of the type [S(2)MoS(2)CuS(2)MoS(2)]. Diffracting crystals of the apo form of ORP have been obtained. Data have been collected for the apo form of ORP to 2.25 A resolution in-house and to beyond 2.0 A resolution at ESRF, Grenoble. The crystals belonged to a trigonal space group, with unit-cell parameters a = 43, b = 43, c = 106 A. | ||
| - | |||
| - | Crystallization and crystallographic analysis of the apo form of the orange protein (ORP) from Desulfovibrio gigas.,Najmudin S, Bonifacio C, Duarte AG, Pauleta SR, Moura I, Moura JJ, Romao MJ Acta Crystallogr Sect F Struct Biol Cryst Commun. 2009 Jul 1;65(Pt, 7):730-2. Epub 2009 Jun 30. PMID:19574652<ref>PMID:19574652</ref> | ||
| - | |||
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 2wfb" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: Atcc 19364]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Bonifacio | + | [[Category: Megalodesulfovibrio gigas]] |
| - | [[Category: Duarte | + | [[Category: Bonifacio C]] |
| - | [[Category: Moura | + | [[Category: Duarte AG]] |
| - | [[Category: Moura | + | [[Category: Moura I]] |
| - | [[Category: Najmudin | + | [[Category: Moura JM]] |
| - | [[Category: Pereira | + | [[Category: Najmudin S]] |
| - | [[Category: Romao | + | [[Category: Pereira AS]] |
| - | + | [[Category: Romao MJ]] | |
| - | + | ||
| - | + | ||
Current revision
High resolution structure of the apo form of the orange protein (ORP) from Desulfovibrio gigas
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