|
|
| Line 1: |
Line 1: |
| | | | |
| | ==Structure of a novel oxidoreductase from Gloeobacter violaceus== | | ==Structure of a novel oxidoreductase from Gloeobacter violaceus== |
| - | <StructureSection load='5ode' size='340' side='right' caption='[[5ode]], [[Resolution|resolution]] 2.20Å' scene=''> | + | <StructureSection load='5ode' size='340' side='right'caption='[[5ode]], [[Resolution|resolution]] 2.20Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[5ode]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Glovo Glovo]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ODE OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ODE FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[5ode]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Gloeobacter_violaceus Gloeobacter violaceus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5ODE OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5ODE FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.196Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5n0j|5n0j]]</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=FAD:FLAVIN-ADENINE+DINUCLEOTIDE'>FAD</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> |
| - | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">gll2934 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=33072 GLOVO])</td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5ode FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ode OCA], [https://pdbe.org/5ode PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5ode RCSB], [https://www.ebi.ac.uk/pdbsum/5ode PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5ode ProSAT]</span></td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5ode FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5ode OCA], [http://pdbe.org/5ode PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5ode RCSB], [http://www.ebi.ac.uk/pdbsum/5ode PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5ode ProSAT]</span></td></tr> | + | |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q7NCP4_GLOVI Q7NCP4_GLOVI] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
| Line 22: |
Line 23: |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Glovo]] | + | [[Category: Gloeobacter violaceus]] |
| - | [[Category: Balsera, M]] | + | [[Category: Large Structures]] |
| - | [[Category: Buey, R M]] | + | [[Category: Balsera M]] |
| - | [[Category: Galindo-Trigo, S]] | + | [[Category: Buey RM]] |
| - | [[Category: Pereda, J M.de]] | + | [[Category: Galindo-Trigo S]] |
| - | [[Category: Flavoprotein]]
| + | [[Category: De Pereda JM]] |
| - | [[Category: Oxidoreductase]]
| + | |
| Structural highlights
Function
Q7NCP4_GLOVI
Publication Abstract from PubMed
Flavoproteins participate in a wide variety of physiologically relevant processes that typically involve redox reactions. Within this protein superfamily, there exists a group that is able to transfer reducing equivalents from FAD to a redox-active disulfide bridge, which further reduces disulfide bridges in target proteins to regulate their structure and function. We have identified a previously undescribed type of flavin enzyme that is exclusive to oxygenic photosynthetic prokaryotes and that is based on the primary sequence that had been assigned as an NADPH-dependent thioredoxin reductase (NTR). However, our experimental data show that the protein does not transfer reducing equivalents from flavins to disulfides as in NTRs but functions in the opposite direction. High-resolution structures of the protein from Gloeobacter violaceus and Synechocystis sp. PCC6803 obtained by X-ray crystallography showed two juxtaposed FAD molecules per monomer in redox communication with an active disulfide bridge in a variant of the fold adopted by NTRs. We have tentatively named the flavoprotein "DDOR" (diflavin-linked disulfide oxidoreductase) and propose that its activity is linked to a thiol-based transfer of reducing equivalents in bacterial membranes. These findings expand the structural and mechanistic repertoire of flavoenzymes with oxidoreductase activity and pave the way to explore new protein engineering approaches aimed at designing redox-active proteins for diverse biotechnological applications.
Unprecedented pathway of reducing equivalents in a diflavin-linked disulfide oxidoreductase.,Buey RM, Arellano JB, Lopez-Maury L, Galindo-Trigo S, Velazquez-Campoy A, Revuelta JL, de Pereda JM, Florencio FJ, Schurmann P, Buchanan BB, Balsera M Proc Natl Acad Sci U S A. 2017 Nov 13. pii: 201713698. doi:, 10.1073/pnas.1713698114. PMID:29133410[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Buey RM, Arellano JB, Lopez-Maury L, Galindo-Trigo S, Velazquez-Campoy A, Revuelta JL, de Pereda JM, Florencio FJ, Schurmann P, Buchanan BB, Balsera M. Unprecedented pathway of reducing equivalents in a diflavin-linked disulfide oxidoreductase. Proc Natl Acad Sci U S A. 2017 Nov 13. pii: 201713698. doi:, 10.1073/pnas.1713698114. PMID:29133410 doi:http://dx.doi.org/10.1073/pnas.1713698114
|