5oj7

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Current revision (16:51, 13 December 2023) (edit) (undo)
 
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==Sirtuin 4 orthologue from Xenopus Tropicalis in complex with ADP-ribose==
==Sirtuin 4 orthologue from Xenopus Tropicalis in complex with ADP-ribose==
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<StructureSection load='5oj7' size='340' side='right' caption='[[5oj7]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
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<StructureSection load='5oj7' size='340' side='right'caption='[[5oj7]], [[Resolution|resolution]] 1.58&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[5oj7]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Silurana_(xenopus)_tropicalis Silurana (xenopus) tropicalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OJ7 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5OJ7 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[5oj7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Xenopus_tropicalis Xenopus tropicalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=5OJ7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=5OJ7 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL+[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL]+HYDROGEN+PHOSPHATE'>AR6</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.58&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[5ojo|5ojo]], [[5ojn|5ojn]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=AR6:[(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY-OXOLAN-2-YL]METHYL+[HYDROXY-[[(2R,3S,4R,5S)-3,4,5-TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL]+HYDROGEN+PHOSPHATE'>AR6</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">sirt4, TGas015j14.1-001 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=8364 Silurana (Xenopus) tropicalis])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=5oj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oj7 OCA], [https://pdbe.org/5oj7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=5oj7 RCSB], [https://www.ebi.ac.uk/pdbsum/5oj7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=5oj7 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=5oj7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=5oj7 OCA], [http://pdbe.org/5oj7 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=5oj7 RCSB], [http://www.ebi.ac.uk/pdbsum/5oj7 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=5oj7 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/Q28CB4_XENTR Q28CB4_XENTR]] NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues.[HAMAP-Rule:MF_03161]
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[https://www.uniprot.org/uniprot/Q28CB4_XENTR Q28CB4_XENTR] NAD-dependent protein deacylase. Catalyzes the NAD-dependent hydrolysis of acyl groups from lysine residues.[HAMAP-Rule:MF_03161]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Pannek, M]]
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[[Category: Large Structures]]
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[[Category: Steegborn, C]]
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[[Category: Xenopus tropicalis]]
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[[Category: Hydrolase]]
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[[Category: Pannek M]]
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[[Category: Sirt4 deacylase posttranslational modification]]
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[[Category: Steegborn C]]

Current revision

Sirtuin 4 orthologue from Xenopus Tropicalis in complex with ADP-ribose

PDB ID 5oj7

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