1p1y

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[[Image:1p1y.gif|left|200px]]
[[Image:1p1y.gif|left|200px]]
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{{Structure
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|PDB= 1p1y |SIZE=350|CAPTION= <scene name='initialview01'>1p1y</scene>, resolution 2.10&Aring;
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The line below this paragraph, containing "STRUCTURE_1p1y", creates the "Structure Box" on the page.
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|SITE=
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You may change the PDB parameter (which sets the PDB file loaded into the applet)
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|LIGAND= <scene name='pdbligand=BRU:5-BROMO-2&#39;-DEOXYURIDINE-5&#39;-MONOPHOSPHATE'>BRU</scene>, <scene name='pdbligand=CB2:PHOSPHORIC+ACID+MONO-[5-(4-AMINO-5-BROMO-2-OXO-2H-PYRIMIDIN-1-YL)-3,4-DIHYDROXY-TETRAHYDRO-FURAN-2-YLMETHYL]+ESTER'>CB2</scene>, <scene name='pdbligand=DA:2&#39;-DEOXYADENOSINE-5&#39;-MONOPHOSPHATE'>DA</scene>, <scene name='pdbligand=DG:2&#39;-DEOXYGUANOSINE-5&#39;-MONOPHOSPHATE'>DG</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>
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or the SCENE parameter (which sets the initial scene displayed when the page is loaded),
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|ACTIVITY=
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or leave the SCENE parameter empty for the default display.
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{{STRUCTURE_1p1y| PDB=1p1y | SCENE= }}
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|RELATEDENTRY=
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|RESOURCES=<span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=1p1y FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1p1y OCA], [http://www.ebi.ac.uk/pdbsum/1p1y PDBsum], [http://www.rcsb.org/pdb/explore.do?structureId=1p1y RCSB]</span>
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'''Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)'''
'''Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)'''
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==About this Structure==
==About this Structure==
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1P1Y is a [[Protein complex]] structure of sequences from [http://en.wikipedia.org/wiki/ ]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P1Y OCA].
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Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1P1Y OCA].
==Reference==
==Reference==
Crystal structure of a continuous three-dimensional DNA lattice., Paukstelis PJ, Nowakowski J, Birktoft JJ, Seeman NC, Chem Biol. 2004 Aug;11(8):1119-26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15324813 15324813]
Crystal structure of a continuous three-dimensional DNA lattice., Paukstelis PJ, Nowakowski J, Birktoft JJ, Seeman NC, Chem Biol. 2004 Aug;11(8):1119-26. PMID:[http://www.ncbi.nlm.nih.gov/pubmed/15324813 15324813]
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[[Category: Protein complex]]
 
[[Category: Birktoft, J J.]]
[[Category: Birktoft, J J.]]
[[Category: Nowakowski, J.]]
[[Category: Nowakowski, J.]]
[[Category: Paukstelis, P J.]]
[[Category: Paukstelis, P J.]]
[[Category: Seeman, N C.]]
[[Category: Seeman, N C.]]
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[[Category: continuous three-dimensional dna lattice]]
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[[Category: Continuous three-dimensional dna lattice]]
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[[Category: parallel-stranded base pair]]
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[[Category: Parallel-stranded base pair]]
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sat May 3 04:34:46 2008''
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''Page seeded by [http://oca.weizmann.ac.il/oca OCA ] on Sun Mar 30 22:53:39 2008''
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Revision as of 01:34, 3 May 2008

Template:STRUCTURE 1p1y

Crystal structure of a continuous three-dimensional DNA lattice from d(GGACAGATGGGAG)


Overview

DNA has proved to be a versatile material for the rational design and assembly of nanometer scale objects. Here we report the crystal structure of a continuous three-dimensional DNA lattice formed by the self-assembly of a DNA 13-mer. The structure consists of stacked layers of parallel helices with adjacent layers linked through parallel-stranded base pairing. The hexagonal lattice geometry contains solvent channels that appear large enough to allow 3'-linked guest molecules into the crystal. We have successfully used these parallel base pairs to design and produce crystals with greatly enlarged solvent channels. This lattice may have applications as a molecular scaffold for structure determination of guest molecules, as a molecular sieve, or in the assembly of molecular electronics. Predictable non-Watson-Crick base pairs, like those described here, may present a new tool in structural DNA nanotechnology.

About this Structure

Full crystallographic information is available from OCA.

Reference

Crystal structure of a continuous three-dimensional DNA lattice., Paukstelis PJ, Nowakowski J, Birktoft JJ, Seeman NC, Chem Biol. 2004 Aug;11(8):1119-26. PMID:15324813 Page seeded by OCA on Sat May 3 04:34:46 2008

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