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2xzf

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Current revision (10:42, 20 December 2023) (edit) (undo)
 
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<StructureSection load='2xzf' size='340' side='right'caption='[[2xzf]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
<StructureSection load='2xzf' size='340' side='right'caption='[[2xzf]], [[Resolution|resolution]] 1.80&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[2xzf]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/"streptococcus_hollandicus"_scholl_1891 "streptococcus hollandicus" scholl 1891]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XZF FirstGlance]. <br>
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<table><tr><td colspan='2'>[[2xzf]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Lactococcus_cremoris Lactococcus cremoris] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2XZF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2XZF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.799&#8491;</td></tr>
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<tr id='NonStdRes'><td class="sblockLbl"><b>[[Non-Standard_Residue|NonStd Res:]]</b></td><td class="sblockDat"><scene name='pdbligand=VET:[(1R,2S,4R)-2-HYDROXY-4-[(5R)-5-HYDROXY-5-METHYL-2,4-DIOXO-IMIDAZOLIDIN-1-YL]CYCLOPENTYL]METHYL+DIHYDROGEN+PHOSPHATE'>VET</scene></td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=VET:[(1R,2S,4R)-2-HYDROXY-4-[(5R)-5-HYDROXY-5-METHYL-2,4-DIOXO-IMIDAZOLIDIN-1-YL]CYCLOPENTYL]METHYL+DIHYDROGEN+PHOSPHATE'>VET</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1pji|1pji]], [[1pm5|1pm5]], [[1xc8|1xc8]], [[1tdz|1tdz]], [[1pjj|1pjj]], [[1kfv|1kfv]], [[1nnj|1nnj]]</div></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/DNA-formamidopyrimidine_glycosylase DNA-formamidopyrimidine glycosylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=3.2.2.23 3.2.2.23] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xzf OCA], [https://pdbe.org/2xzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xzf RCSB], [https://www.ebi.ac.uk/pdbsum/2xzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xzf ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2xzf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2xzf OCA], [https://pdbe.org/2xzf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2xzf RCSB], [https://www.ebi.ac.uk/pdbsum/2xzf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2xzf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/FPG_LACLC FPG_LACLC]] Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.<ref>PMID:7704272</ref>
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[https://www.uniprot.org/uniprot/FPG_LACLC FPG_LACLC] Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.<ref>PMID:7704272</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Streptococcus hollandicus scholl 1891]]
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[[Category: Lactococcus cremoris]]
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[[Category: DNA-formamidopyrimidine glycosylase]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Aller, P]]
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[[Category: Synthetic construct]]
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[[Category: Carrel, T]]
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[[Category: Aller P]]
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[[Category: Castaing, B]]
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[[Category: Carrel T]]
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[[Category: Coste, F]]
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[[Category: Castaing B]]
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[[Category: Culard, F]]
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[[Category: Coste F]]
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[[Category: Essalhi, K]]
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[[Category: Culard F]]
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[[Category: Gehrke, T H]]
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[[Category: Essalhi K]]
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[[Category: Izquierdo, M A]]
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[[Category: Gehrke TH]]
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[[Category: LeBihan, Y V]]
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[[Category: Izquierdo MA]]
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[[Category: Hydrolase-dna complex]]
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[[Category: LeBihan YV]]

Current revision

CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE WILD-TYPE LACTOCOCCUS LACTIS FPG (MUTM) AND AN OXIDIZED PYRIMIDINE CONTAINING DNA AT 293K

PDB ID 2xzf

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