1cn7

From Proteopedia

(Difference between revisions)

Current revision

Yeast ribosomal protein L30

Structural highlights

1cn7 is a 1 chain structure with sequence from Saccharomyces cerevisiae. This structure supersedes the now removed PDB entry 1ck9. Full experimental information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Solution NMR
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

RL30_YEAST

Evolutionary Conservation

Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.

Publication Abstract from PubMed

The ribosomal protein L30 from yeast Saccharomyces cerevisiae auto-regulates its own synthesis by binding to a structural element in both its pre-mRNA and its mRNA. The three-dimensional structures of L30 in the free (f L30) and the pre-mRNA bound (b L30) forms have been solved by nuclear magnetic resonance spectroscopy. Both protein structures contain four alternating alpha-helices and four beta-strands segments and adopt an overall topology that is an alphabetaalpha three-layer sandwich, representing a unique fold. Three loops on one end of the alphabetaalpha sandwich have been mapped as the RNA binding site on the basis of structural comparison, chemical shift perturbation and the inter-molecular nuclear Overhauser effects to the RNA. The structural and dynamic comparison of f L30 and b L30 reveals that local dynamics may play an important role in the RNA binding. The fourth helix in b L30 is longer than in f L30, and is stabilized by RNA binding. The exposed hydrophobic surface that is buried upon RNA binding may provide the energy necessary to drive secondary structure formation, and may account for the increased stability of b L30.

Local folding coupled to RNA binding in the yeast ribosomal protein L30.,Mao H, Williamson JR J Mol Biol. 1999 Sep 17;292(2):345-59. PMID:10493880^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Mao H, Williamson JR. Local folding coupled to RNA binding in the yeast ribosomal protein L30. J Mol Biol. 1999 Sep 17;292(2):345-59. PMID:10493880 doi:10.1006/jmbi.1999.3044

1 Structural highlights
2 Function
3 Evolutionary Conservation
4 Publication Abstract from PubMed
5 See Also
6 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/1cn7"

Categories: Large Structures | Saccharomyces cerevisiae | Mao H | Willamson JR

@@ Line 1: / Line 1: @@
 ==Yeast ribosomal protein L30==
-<StructureSection load='1cn7' size='340' side='right'caption='[[1cn7]], [[NMR_Ensembles_of_Models | 20 NMR models]]' scene=''>
+<StructureSection load='1cn7' size='340' side='right'caption='[[1cn7]]' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[1cn7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Atcc_18824 Atcc 18824]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1ck9 1ck9]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CN7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CN7 FirstGlance]. <br>
+<table><tr><td colspan='2'>[[1cn7]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Saccharomyces_cerevisiae Saccharomyces cerevisiae]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=1ck9 1ck9]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1CN7 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1CN7 FirstGlance]. <br>
-</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">RPL30 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4932 ATCC 18824])</td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1cn7 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1cn7 OCA], [https://pdbe.org/1cn7 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1cn7 RCSB], [https://www.ebi.ac.uk/pdbsum/1cn7 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1cn7 ProSAT]</span></td></tr>
 </table>
+== Function ==
+[https://www.uniprot.org/uniprot/RL30_YEAST RL30_YEAST]
 == Evolutionary Conservation ==
 [[Image:Consurf_key_small.gif|200px|right]]
@@ Line 33: / Line 35: @@
 __TOC__
 </StructureSection>
-[[Category: Atcc 18824]]
 [[Category: Large Structures]]
-[[Category: Mao, H]]
+[[Category: Saccharomyces cerevisiae]]
-[[Category: Willamson, J R]]
+[[Category: Mao H]]
-[[Category: Auto-regulation of pre-mrna splicing and mrna translation]]
+[[Category: Willamson JR]]
-[[Category: Ribosomal protein]]
-[[Category: Ribosome]]

1cn7

From Proteopedia

Current revision

Yeast ribosomal protein L30

Structural highlights

Function

Evolutionary Conservation

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

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