1uhr
From Proteopedia
(Difference between revisions)
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==Solution structure of the SWIB domain of mouse BRG1-associated factor 60a== | ==Solution structure of the SWIB domain of mouse BRG1-associated factor 60a== | ||
- | <StructureSection load='1uhr' size='340' side='right'caption='[[1uhr | + | <StructureSection load='1uhr' size='340' side='right'caption='[[1uhr]]' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1uhr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1uhr]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Mus_musculus Mus musculus]. Full experimental information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1UHR OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1UHR FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Solution NMR</td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uhr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uhr OCA], [https://pdbe.org/1uhr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uhr RCSB], [https://www.ebi.ac.uk/pdbsum/1uhr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uhr ProSAT], [https://www.topsan.org/Proteins/RSGI/1uhr TOPSAN]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1uhr FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1uhr OCA], [https://pdbe.org/1uhr PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1uhr RCSB], [https://www.ebi.ac.uk/pdbsum/1uhr PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1uhr ProSAT], [https://www.topsan.org/Proteins/RSGI/1uhr TOPSAN]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/SMRD1_MOUSE SMRD1_MOUSE] Involved in chromatin remodeling. Has a strong influence on the Vitamin D-mediated transcriptional activity from an enhancer Vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer. Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation. Also involved in vitamin D-coupled transcription regulation via its association with the WINAC complex, a chromatin-remodeling complex recruited by vitamin D receptor (VDR), which is required for the ligand-bound VDR-mediated transrepression of the CYP27B1 gene (By similarity). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a post-mitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to post-mitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth.<ref>PMID:17640523</ref> | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
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</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: | + | [[Category: Mus musculus]] |
- | [[Category: Aoki | + | [[Category: Aoki M]] |
- | [[Category: Arakawa | + | [[Category: Arakawa T]] |
- | [[Category: Carninci | + | [[Category: Carninci P]] |
- | [[Category: Hayashizaki | + | [[Category: Hayashizaki Y]] |
- | [[Category: Hirota | + | [[Category: Hirota H]] |
- | [[Category: Inoue | + | [[Category: Inoue M]] |
- | [[Category: Kawai | + | [[Category: Kawai J]] |
- | [[Category: Kigawa | + | [[Category: Kigawa T]] |
- | [[Category: Koshiba | + | [[Category: Koshiba S]] |
- | [[Category: Matsuda | + | [[Category: Matsuda T]] |
- | [[Category: Nameki | + | [[Category: Nameki N]] |
- | [[Category: Osanai | + | [[Category: Osanai T]] |
- | + | [[Category: Saito K]] | |
- | [[Category: Saito | + | [[Category: Seki E]] |
- | [[Category: Seki | + | [[Category: Shirouzu M]] |
- | [[Category: Shirouzu | + | [[Category: Tanaka A]] |
- | [[Category: Tanaka | + | [[Category: Terada T]] |
- | [[Category: Terada | + | [[Category: Yabuki T]] |
- | [[Category: Yabuki | + | [[Category: Yamada K]] |
- | [[Category: Yamada | + | [[Category: Yokoyama S]] |
- | [[Category: Yokoyama | + | [[Category: Yoshida M]] |
- | [[Category: Yoshida | + | |
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Current revision
Solution structure of the SWIB domain of mouse BRG1-associated factor 60a
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Categories: Large Structures | Mus musculus | Aoki M | Arakawa T | Carninci P | Hayashizaki Y | Hirota H | Inoue M | Kawai J | Kigawa T | Koshiba S | Matsuda T | Nameki N | Osanai T | Saito K | Seki E | Shirouzu M | Tanaka A | Terada T | Yabuki T | Yamada K | Yokoyama S | Yoshida M