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| | <StructureSection load='2nnf' size='340' side='right'caption='[[2nnf]], [[Resolution|resolution]] 2.39Å' scene=''> | | <StructureSection load='2nnf' size='340' side='right'caption='[[2nnf]], [[Resolution|resolution]] 2.39Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[2nnf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlli Chlli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NNF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[2nnf]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Chlorobium_limicola Chlorobium limicola]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=2NNF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=2NNF FirstGlance]. <br> |
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.39Å</td></tr> |
| - | <tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[2nnc|2nnc]]</div></td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr> |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nnf OCA], [https://pdbe.org/2nnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nnf RCSB], [https://www.ebi.ac.uk/pdbsum/2nnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nnf ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=2nnf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=2nnf OCA], [https://pdbe.org/2nnf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=2nnf RCSB], [https://www.ebi.ac.uk/pdbsum/2nnf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=2nnf ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/Q8RLX2_CHLLI Q8RLX2_CHLLI] |
| | == Evolutionary Conservation == | | == Evolutionary Conservation == |
| | [[Image:Consurf_key_small.gif|200px|right]] | | [[Image:Consurf_key_small.gif|200px|right]] |
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| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Chlli]] | + | [[Category: Chlorobium limicola]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Beeumen, J Van]]
| + | [[Category: Savvides SN]] |
| - | [[Category: Driessche, G Van]]
| + | [[Category: Stout J]] |
| - | [[Category: Savvides, S N]] | + | [[Category: Van Beeumen J]] |
| - | [[Category: Stout, J]] | + | [[Category: Van Driessche G]] |
| - | [[Category: Beta sandwich]] | + | |
| - | [[Category: Green sulfur bacterium]] | + | |
| - | [[Category: Ligand binding protein]]
| + | |
| - | [[Category: Sox]]
| + | |
| - | [[Category: Sulfur binding protein]]
| + | |
| Structural highlights
Function
Q8RLX2_CHLLI
Evolutionary Conservation
Check, as determined by ConSurfDB. You may read the explanation of the method and the full data available from ConSurf.
Publication Abstract from PubMed
Dissimilatory oxidation of thiosulfate in the green sulfur bacterium Chlorobium limicola f. thiosulfatophilum is carried out by the ubiquitous sulfur-oxidizing (Sox) multi-enzyme system. In this system, SoxY plays a key role, functioning as the sulfur substrate-binding protein that offers its sulfur substrate, which is covalently bound to a conserved C-terminal cysteine, to another oxidizing Sox enzyme. Here, we report the crystal structures of a stand-alone SoxY protein of C. limicola f. thiosulfatophilum, solved at 2.15 A and 2.40 A resolution using X-ray diffraction data collected at 100 K and room temperature, respectively. The structure reveals a monomeric Ig-like protein, with an N-terminal alpha-helix, that oligomerizes into a tetramer via conserved contact regions between the monomers. The tetramer can be described as a dimer of dimers that exhibits one large hydrophobic contact region in each dimer and two small hydrophilic interface patches in the tetramer. At the tetramer interface patch, two conserved redox-active C-terminal cysteines form an intersubunit disulfide bridge. Intriguingly, SoxY exhibits a dimer/tetramer equilibrium that is dependent on the redox state of the cysteines and on the type of sulfur substrate component bound to them. Taken together, the dimer/tetramer equilibrium, the specific interactions between the subunits in the tetramer, and the significant conservation level of the interfaces strongly indicate that these SoxY oligomers are biologically relevant.
X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure.,Stout J, Van Driessche G, Savvides SN, Van Beeumen J Protein Sci. 2007 Apr;16(4):589-601. Epub 2007 Feb 27. PMID:17327392[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Stout J, Van Driessche G, Savvides SN, Van Beeumen J. X-ray crystallographic analysis of the sulfur carrier protein SoxY from Chlorobium limicola f. thiosulfatophilum reveals a tetrameric structure. Protein Sci. 2007 Apr;16(4):589-601. Epub 2007 Feb 27. PMID:17327392 doi:10.1110/ps.062633607
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