This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.
Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.
4u25
From Proteopedia
(Difference between revisions)
| Line 4: | Line 4: | ||
== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[4u25]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4tp4 4tp4], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4tp5 4tp5], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4tp6 4tp6] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4tp7 4tp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U25 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U25 FirstGlance]. <br> | <table><tr><td colspan='2'>[[4u25]] is a 20 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli_K-12 Escherichia coli K-12]. This structure supersedes the now removed PDB entries [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4tp4 4tp4], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4tp5 4tp5], [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4tp6 4tp6] and [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=4tp7 4tp7]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=4U25 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=4U25 FirstGlance]. <br> | ||
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=VIR:VIRGINIAMYCIN+M1'>VIR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.9Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=VIR:VIRGINIAMYCIN+M1'>VIR</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u25 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u25 OCA], [https://pdbe.org/4u25 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u25 RCSB], [https://www.ebi.ac.uk/pdbsum/4u25 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u25 ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=4u25 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=4u25 OCA], [https://pdbe.org/4u25 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=4u25 RCSB], [https://www.ebi.ac.uk/pdbsum/4u25 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=4u25 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| Line 18: | Line 19: | ||
</div> | </div> | ||
<div class="pdbe-citations 4u25" style="background-color:#fffaf0;"></div> | <div class="pdbe-citations 4u25" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Ribosome 3D structures|Ribosome 3D structures]] | ||
== References == | == References == | ||
<references/> | <references/> | ||
Current revision
Crystal structure of the E. coli ribosome bound to virginiamycin M1.
| |||||||||||
