8b37
From Proteopedia
(Difference between revisions)
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- | '''Unreleased structure''' | ||
- | + | ==Crystal structure of Pyrobaculum aerophilum potassium-independent proton pumping membrane integral pyrophosphatase in complex with imidodiphosphate and magnesium, and with bound sulphate== | |
+ | <StructureSection load='8b37' size='340' side='right'caption='[[8b37]], [[Resolution|resolution]] 3.84Å' scene=''> | ||
+ | == Structural highlights == | ||
+ | <table><tr><td colspan='2'>[[8b37]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrobaculum_aerophilum Pyrobaculum aerophilum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B37 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B37 FirstGlance]. <br> | ||
+ | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.84Å</td></tr> | ||
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=2PN:IMIDODIPHOSPHORIC+ACID'>2PN</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b37 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b37 OCA], [https://pdbe.org/8b37 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b37 RCSB], [https://www.ebi.ac.uk/pdbsum/8b37 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b37 ProSAT]</span></td></tr> | ||
+ | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/HPPA_PYRAE HPPA_PYRAE] Proton pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for proton movement across the membrane. Generates a proton motive force.[HAMAP-Rule:MF_01129] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Membrane-bound pyrophosphatases (M-PPases) are homodimeric primary ion pumps that couple the transport of Na(+)- and/or H(+) across membranes to the hydrolysis of pyrophosphate. Their role in the virulence of protist pathogens like Plasmodium falciparum makes them an intriguing target for structural and functional studies. Here, we show the first structure of a K(+)-independent M-PPase, asymmetric and time-dependent substrate binding in time-resolved structures of a K(+)-dependent M-PPase and demonstrate pumping-before-hydrolysis by electrometric studies. We suggest how key residues in helix 12, 13, and the exit channel loops affect ion selectivity and K(+)-activation due to a complex interplay of residues that are involved in subunit-subunit communication. Our findings not only explain ion selectivity in M-PPases but also why they display half-of-the-sites reactivity. Based on this, we propose, for the first time, a unified model for ion-pumping, hydrolysis, and energy coupling in all M-PPases, including those that pump both Na(+) and H(+). | ||
- | + | Functional and structural asymmetry suggest a unifying principle for catalysis in membrane-bound pyrophosphatases.,Strauss J, Wilkinson C, Vidilaseris K, de Castro Ribeiro OM, Liu J, Hillier J, Wichert M, Malinen AM, Gehl B, Jeuken LJ, Pearson AR, Goldman A EMBO Rep. 2024 Jan 5. doi: 10.1038/s44319-023-00037-x. PMID:38182815<ref>PMID:38182815</ref> | |
- | + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | |
- | [[Category: | + | </div> |
- | [[Category: | + | <div class="pdbe-citations 8b37" style="background-color:#fffaf0;"></div> |
- | [[Category: Goldman | + | == References == |
- | [[Category: Hillier | + | <references/> |
- | [[Category: | + | __TOC__ |
- | [[Category: | + | </StructureSection> |
- | [[Category: | + | [[Category: Large Structures]] |
- | [[Category: | + | [[Category: Pyrobaculum aerophilum]] |
- | [[Category: Ribeiro | + | [[Category: Gehl B]] |
- | [[Category: | + | [[Category: Goldman A]] |
- | [[Category: | + | [[Category: Hillier J]] |
- | [[Category: | + | [[Category: Jeuken LC]] |
+ | [[Category: Liu J]] | ||
+ | [[Category: Malinen A]] | ||
+ | [[Category: Pearson AR]] | ||
+ | [[Category: Ribeiro O]] | ||
+ | [[Category: Strauss J]] | ||
+ | [[Category: Vidilaseris K]] | ||
+ | [[Category: Wilkinson C]] |
Revision as of 10:03, 17 January 2024
Crystal structure of Pyrobaculum aerophilum potassium-independent proton pumping membrane integral pyrophosphatase in complex with imidodiphosphate and magnesium, and with bound sulphate
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Categories: Large Structures | Pyrobaculum aerophilum | Gehl B | Goldman A | Hillier J | Jeuken LC | Liu J | Malinen A | Pearson AR | Ribeiro O | Strauss J | Vidilaseris K | Wilkinson C