6qo3

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Current revision (12:04, 24 January 2024) (edit) (undo)
 
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<StructureSection load='6qo3' size='340' side='right'caption='[[6qo3]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
<StructureSection load='6qo3' size='340' side='right'caption='[[6qo3]], [[Resolution|resolution]] 1.65&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6qo3]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"mycobacterium_abcessus"_moore_and_frerichs_1953 "mycobacterium abcessus" moore and frerichs 1953]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QO3 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6QO3 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6qo3]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacteroides_abscessus Mycobacteroides abscessus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QO3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QO3 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=J9N:5-thiophen-2-yl-4~{H}-pyrazol-3-amine'>J9N</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.65&#8491;</td></tr>
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<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6nvr|6nvr]]</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=J9N:3-thiophen-2-yl-1H-pyrazol-5-amine'>J9N</scene></td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trmD, MAB_3226c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36809 "Mycobacterium abcessus" Moore and Frerichs 1953])</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qo3 OCA], [https://pdbe.org/6qo3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qo3 RCSB], [https://www.ebi.ac.uk/pdbsum/6qo3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qo3 ProSAT]</span></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(guanine(37)-N(1))-methyltransferase tRNA (guanine(37)-N(1))-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.228 2.1.1.228] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6qo3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qo3 OCA], [http://pdbe.org/6qo3 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qo3 RCSB], [http://www.ebi.ac.uk/pdbsum/6qo3 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qo3 ProSAT]</span></td></tr>
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</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/B1MDI3_MYCA9 B1MDI3_MYCA9]] Specifically methylates guanosine-37 in various tRNAs.[HAMAP-Rule:MF_00605][RuleBase:RU003464][SAAS:SAAS00040552]
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[https://www.uniprot.org/uniprot/B1MDI3_MYCA9 B1MDI3_MYCA9] Specifically methylates guanosine-37 in various tRNAs.[HAMAP-Rule:MF_00605][RuleBase:RU003464][SAAS:SAAS00040552]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Mycobacterium abcessus moore and frerichs 1953]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Abell, C]]
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[[Category: Mycobacteroides abscessus]]
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[[Category: Blundell, T L]]
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[[Category: Abell C]]
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[[Category: Coyne, A G]]
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[[Category: Blundell TL]]
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[[Category: Mendes, V]]
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[[Category: Coyne AG]]
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[[Category: Thomas, S E]]
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[[Category: Mendes V]]
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[[Category: Whitehouse, A J]]
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[[Category: Thomas SE]]
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[[Category: Spout methyltransferase]]
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[[Category: Whitehouse AJ]]
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[[Category: Transferase]]
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[[Category: Trmd]]
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[[Category: Trna methyltransferase]]
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Current revision

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with Fragment 2 (5-Amino-3-(2-thienyl) pyrazole)

PDB ID 6qo3

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