6qr5

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:06, 24 January 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6qr5' size='340' side='right'caption='[[6qr5]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
<StructureSection load='6qr5' size='340' side='right'caption='[[6qr5]], [[Resolution|resolution]] 1.81&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6qr5]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/"mycobacterium_abcessus"_moore_and_frerichs_1953 "mycobacterium abcessus" moore and frerichs 1953]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QR5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6QR5 FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6qr5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacteroides_abscessus Mycobacteroides abscessus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6QR5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6QR5 FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JFH:3-[1-[[4-(pyrrolidin-1-ylmethyl)phenyl]methyl]indol-6-yl]-1~{H}-pyrazol-5-amine'>JFH</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.81&#8491;</td></tr>
-
<tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[6nvr|6nvr]]</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=JFH:3-[1-[[4-(pyrrolidin-1-ylmethyl)phenyl]methyl]indol-6-yl]-1~{H}-pyrazol-5-amine'>JFH</scene></td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">trmD, MAB_3226c ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=36809 "Mycobacterium abcessus" Moore and Frerichs 1953])</td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6qr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qr5 OCA], [https://pdbe.org/6qr5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6qr5 RCSB], [https://www.ebi.ac.uk/pdbsum/6qr5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6qr5 ProSAT]</span></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/tRNA_(guanine(37)-N(1))-methyltransferase tRNA (guanine(37)-N(1))-methyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.1.228 2.1.1.228] </span></td></tr>
+
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6qr5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6qr5 OCA], [http://pdbe.org/6qr5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6qr5 RCSB], [http://www.ebi.ac.uk/pdbsum/6qr5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6qr5 ProSAT]</span></td></tr>
+
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/B1MDI3_MYCA9 B1MDI3_MYCA9]] Specifically methylates guanosine-37 in various tRNAs.[HAMAP-Rule:MF_00605][RuleBase:RU003464][SAAS:SAAS00040552]
+
[https://www.uniprot.org/uniprot/B1MDI3_MYCA9 B1MDI3_MYCA9] Specifically methylates guanosine-37 in various tRNAs.[HAMAP-Rule:MF_00605][RuleBase:RU003464][SAAS:SAAS00040552]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 25: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Mycobacterium abcessus moore and frerichs 1953]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Abell, C]]
+
[[Category: Mycobacteroides abscessus]]
-
[[Category: Blundell, T L]]
+
[[Category: Abell C]]
-
[[Category: Coyne, A G]]
+
[[Category: Blundell TL]]
-
[[Category: Mendes, V]]
+
[[Category: Coyne AG]]
-
[[Category: Thomas, S E]]
+
[[Category: Mendes V]]
-
[[Category: Whitehouse, A J]]
+
[[Category: Thomas SE]]
-
[[Category: Spout methyltransferase]]
+
[[Category: Whitehouse AJ]]
-
[[Category: Transferase]]
+
-
[[Category: Trmd]]
+
-
[[Category: Trna methyltransferase]]
+

Current revision

Crystal structure of TrmD, a tRNA-(N1G37) methyltransferase, from Mycobacterium abscessus in complex with inhibitor

PDB ID 6qr5

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools