6r2j

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:13, 24 January 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6r2j' size='340' side='right'caption='[[6r2j]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
<StructureSection load='6r2j' size='340' side='right'caption='[[6r2j]], [[Resolution|resolution]] 1.44&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6r2j]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R2J OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6R2J FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6r2j]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_stutzeri_A1501 Pseudomonas stutzeri A1501]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6R2J OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6R2J FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CBI:CELLOBIOSE'>CBI</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.44&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6r2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r2j OCA], [http://pdbe.org/6r2j PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6r2j RCSB], [http://www.ebi.ac.uk/pdbsum/6r2j PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6r2j ProSAT]</span></td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=PRD_900005:beta-cellobiose'>PRD_900005</scene>, <scene name='pdbligand=TRS:2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL'>TRS</scene></td></tr>
 +
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6r2j FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6r2j OCA], [https://pdbe.org/6r2j PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6r2j RCSB], [https://www.ebi.ac.uk/pdbsum/6r2j PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6r2j ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A4VME5_PSEU5 A4VME5_PSEU5]
 +
<div style="background-color:#fffaf0;">
 +
== Publication Abstract from PubMed ==
 +
The discovery of new glycoside hydrolases that can be utilized in the chemoenzymatic synthesis of carbohydrates has emerged as a promising approach for various biotechnological processes. In this study, recombinant Ps_Cel5A from Pseudomonas stutzeri A1501, a novel member of the GH5_5 subfamily, was expressed, purified and crystallized. Preliminary experiments confirmed the ability of Ps_Cel5A to catalyze transglycosylation with cellotriose as a substrate. The crystal structure revealed several structural determinants in and around the positive subsites, providing a molecular basis for a better understanding of the mechanisms that promote and favour synthesis rather than hydrolysis. In the positive subsites, two nonconserved positively charged residues (Arg178 and Lys216) were found to interact with cellobiose. This adaptation has also been reported for transglycosylating beta-mannanases of the GH5_7 subfamily.
 +
 +
Crystal structure determination of Pseudomonas stutzeri A1501 endoglucanase Cel5A: the search for a molecular basis for glycosynthesis in GH5_5 enzymes.,Dutoit R, Delsaute M, Collet L, Vander Wauven C, Van Elder D, Berlemont R, Richel A, Galleni M, Bauvois C Acta Crystallogr D Struct Biol. 2019 Jun 1;75(Pt 6):605-615. doi:, 10.1107/S2059798319007113. Epub 2019 Jun 6. PMID:31205022<ref>PMID:31205022</ref>
 +
 +
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 +
</div>
 +
<div class="pdbe-citations 6r2j" style="background-color:#fffaf0;"></div>
==See Also==
==See Also==
-
*[[Journal:Acta Cryst D:S2059798319007113|Journal:Acta Cryst D:S2059798319007113]]
+
*[[Glucanase 3D structures|Glucanase 3D structures]]
 +
== References ==
 +
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bauvois, C]]
+
[[Category: Pseudomonas stutzeri A1501]]
-
[[Category: Berlemont, R]]
+
[[Category: Bauvois C]]
-
[[Category: Delsaute, M]]
+
[[Category: Berlemont R]]
-
[[Category: Dutoit, R]]
+
[[Category: Delsaute M]]
-
[[Category: Elder, D Van]]
+
[[Category: Dutoit R]]
-
[[Category: Galleni, M]]
+
[[Category: Galleni M]]
-
[[Category: Cellobiose]]
+
[[Category: Van Elder D]]
-
[[Category: Cellulase]]
+
-
[[Category: Endoglucanase]]
+
-
[[Category: Gh5]]
+
-
[[Category: Hydrolase]]
+
-
[[Category: Transglycosylation]]
+

Current revision

Crystal Structure of Pseudomonas stutzeri endoglucanase Cel5A in complex with cellobiose

PDB ID 6r2j

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools