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| <StructureSection load='6s81' size='340' side='right'caption='[[6s81]], [[Resolution|resolution]] 1.78Å' scene=''> | | <StructureSection load='6s81' size='340' side='right'caption='[[6s81]], [[Resolution|resolution]] 1.78Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6s81]] is a 4 chain structure with sequence from [http://en.wikipedia.org/wiki/Pyrfu Pyrfu]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S81 OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6S81 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6s81]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Pyrococcus_furiosus_DSM_3638 Pyrococcus furiosus DSM 3638]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6S81 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6S81 FirstGlance]. <br> |
- | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.784Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mat, PF1866 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=186497 PYRFU])</td></tr> | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=MES:2-(N-MORPHOLINO)-ETHANESULFONIC+ACID'>MES</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr> |
- | <tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[http://en.wikipedia.org/wiki/Methionine_adenosyltransferase Methionine adenosyltransferase], with EC number [http://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.5.1.6 2.5.1.6] </span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6s81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s81 OCA], [https://pdbe.org/6s81 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6s81 RCSB], [https://www.ebi.ac.uk/pdbsum/6s81 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6s81 ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6s81 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6s81 OCA], [http://pdbe.org/6s81 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6s81 RCSB], [http://www.ebi.ac.uk/pdbsum/6s81 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6s81 ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| == Function == | | == Function == |
- | [[http://www.uniprot.org/uniprot/METK_PYRFU METK_PYRFU]] Catalyzes the formation of S-adenosylmethionine from methionine and ATP. | + | [https://www.uniprot.org/uniprot/METK_PYRFU METK_PYRFU] Catalyzes the formation of S-adenosylmethionine from methionine and ATP. |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| </StructureSection> | | </StructureSection> |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Methionine adenosyltransferase]] | + | [[Category: Pyrococcus furiosus DSM 3638]] |
- | [[Category: Pyrfu]]
| + | [[Category: Degano M]] |
- | [[Category: Degano, M]] | + | [[Category: Minici C]] |
- | [[Category: Minici, C]] | + | [[Category: Porcelli M]] |
- | [[Category: Porcelli, M]] | + | |
- | [[Category: Cofactor biosynthesis]]
| + | |
- | [[Category: Cytoplasmic]]
| + | |
- | [[Category: S-adenosyl methionine synthesis]]
| + | |
- | [[Category: Transferase]]
| + | |
| Structural highlights
Function
METK_PYRFU Catalyzes the formation of S-adenosylmethionine from methionine and ATP.
Publication Abstract from PubMed
Methionine adenosyltransferases catalyse the biosynthesis of S-adenosylmethionine, the primary methyl group donor in biochemical reactions, through the condensation of methionine and ATP. Here, we report the structural analysis of the Pyrococcus furiosus methionine adenosyltransferase (PfMAT) captured in the unliganded, substrate- and product-bound states. The conformational changes taking place during the enzymatic catalytic cycle are allosterically propagated by amino acid residues conserved in the archaeal orthologues to induce an asymmetric dimer structure. The distinct occupancy of the active sites within a PfMAT dimer is consistent with a half-site reactivity that is mediated by a product-induced negative cooperativity. The structures of intermediate states of PfMAT reported here suggest a distinct molecular mechanism for S-adenosylmethionine synthesis in Archaea, likely consequence of the evolutionary pressure to achieve protein stability under extreme conditions.
Structures of catalytic cycle intermediates of the Pyrococcus furiosus methionine adenosyltransferase demonstrate negative cooperativity in the archaeal orthologues.,Minici C, Mosca L, Ilisso CP, Cacciapuoti G, Porcelli M, Degano M J Struct Biol. 2020 Jan 18:107462. doi: 10.1016/j.jsb.2020.107462. PMID:31962159[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Minici C, Mosca L, Ilisso CP, Cacciapuoti G, Porcelli M, Degano M. Structures of catalytic cycle intermediates of the Pyrococcus furiosus methionine adenosyltransferase demonstrate negative cooperativity in the archaeal orthologues. J Struct Biol. 2020 Jan 18:107462. doi: 10.1016/j.jsb.2020.107462. PMID:31962159 doi:http://dx.doi.org/10.1016/j.jsb.2020.107462
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