This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.


Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


6sbd

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:38, 24 January 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='6sbd' size='340' side='right'caption='[[6sbd]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
<StructureSection load='6sbd' size='340' side='right'caption='[[6sbd]], [[Resolution|resolution]] 1.40&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[6sbd]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Scytonema_sp._pcc_10023 Scytonema sp. pcc 10023]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SBD OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6SBD FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[6sbd]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Scytonema_sp._PCC_10023 Scytonema sp. PCC 10023]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SBD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6SBD FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=L4B:(4~{a}~{R},4~{b}~{S},6~{a}~{R},11~{a}~{R},11~{b}~{S},13~{a}~{R})-1,1,4~{a},6~{a},11~{b}-pentamethyl-9,10-bis(oxidanyl)-+3,4,4~{b},5,6,11,11~{a},12,13,13~{a}-decahydro-2~{H}-indeno[2,1-a]phenanthrene-7-carboxylic+acid'>L4B</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.4&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">mstE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1680591 Scytonema sp. PCC 10023])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=L4B:(4~{a}~{R},4~{b}~{S},6~{a}~{R},11~{a}~{R},11~{b}~{S},13~{a}~{R})-1,1,4~{a},6~{a},11~{b}-pentamethyl-9,10-bis(oxidanyl)-+3,4,4~{b},5,6,11,11~{a},12,13,13~{a}-decahydro-2~{H}-indeno[2,1-a]phenanthrene-7-carboxylic+acid'>L4B</scene>, <scene name='pdbligand=MPD:(4S)-2-METHYL-2,4-PENTANEDIOL'>MPD</scene></td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6sbd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sbd OCA], [http://pdbe.org/6sbd PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6sbd RCSB], [http://www.ebi.ac.uk/pdbsum/6sbd PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6sbd ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6sbd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6sbd OCA], [https://pdbe.org/6sbd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6sbd RCSB], [https://www.ebi.ac.uk/pdbsum/6sbd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6sbd ProSAT]</span></td></tr>
</table>
</table>
 +
== Function ==
 +
[https://www.uniprot.org/uniprot/A0A2D1CM82_9CYAN A0A2D1CM82_9CYAN]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 22: Line 24:
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Scytonema sp. pcc 10023]]
+
[[Category: Scytonema sp. PCC 10023]]
-
[[Category: Cahn, J K.B]]
+
[[Category: Cahn JKB]]
-
[[Category: Ecker, F]]
+
[[Category: Ecker F]]
-
[[Category: Groll, M]]
+
[[Category: Groll M]]
-
[[Category: Leopold-Messer, S]]
+
[[Category: Leopold-Messer S]]
-
[[Category: Moosmann, P]]
+
[[Category: Moosmann P]]
-
[[Category: Piel, J]]
+
[[Category: Piel J]]
-
[[Category: Alpha6-alpha6 barrel]]
+
-
[[Category: Biosynthetic protein]]
+
-
[[Category: Marine drug]]
+
-
[[Category: Merosterol]]
+
-
[[Category: Type ii terpene cyclase]]
+

Current revision

Structure of type II terpene cyclase MstE_D109A from Scytonema in complex with merosterolic acid A (product)

PDB ID 6sbd

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools