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| <StructureSection load='6scf' size='340' side='right'caption='[[6scf]], [[Resolution|resolution]] 1.55Å' scene=''> | | <StructureSection load='6scf' size='340' side='right'caption='[[6scf]], [[Resolution|resolution]] 1.55Å' scene=''> |
| == Structural highlights == | | == Structural highlights == |
- | <table><tr><td colspan='2'>[[6scf]] is a 12 chain structure with sequence from [http://en.wikipedia.org/wiki/Archaeal_virus_sirv Archaeal virus sirv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SCF OCA]. For a <b>guided tour on the structure components</b> use [http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6SCF FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6scf]] is a 12 chain structure with sequence from [https://en.wikipedia.org/wiki/Sulfolobus_islandicus_rod-shaped_virus_1 Sulfolobus islandicus rod-shaped virus 1] and [https://en.wikipedia.org/wiki/Synthetic_construct Synthetic construct]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6SCF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6SCF FirstGlance]. <br> |
- | </td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat">[[2x4i|2x4i]]</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.55Å</td></tr> |
- | <tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">114 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=157898 Archaeal virus SIRV])</td></tr>
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6scf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6scf OCA], [https://pdbe.org/6scf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6scf RCSB], [https://www.ebi.ac.uk/pdbsum/6scf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6scf ProSAT]</span></td></tr> |
- | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://oca.weizmann.ac.il/oca-docs/fgij/fg.htm?mol=6scf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6scf OCA], [http://pdbe.org/6scf PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6scf RCSB], [http://www.ebi.ac.uk/pdbsum/6scf PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6scf ProSAT]</span></td></tr> | + | |
| </table> | | </table> |
| + | == Function == |
| + | [https://www.uniprot.org/uniprot/Y114_SIRV1 Y114_SIRV1] |
| <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| __TOC__ | | __TOC__ |
| </StructureSection> | | </StructureSection> |
- | [[Category: Archaeal virus sirv]] | |
| [[Category: Large Structures]] | | [[Category: Large Structures]] |
- | [[Category: Athukoralage, J S]] | + | [[Category: Sulfolobus islandicus rod-shaped virus 1]] |
- | [[Category: Gloster, T M]] | + | [[Category: Synthetic construct]] |
- | [[Category: Graham, S]] | + | [[Category: Athukoralage JS]] |
- | [[Category: McMahon, S A]] | + | [[Category: Gloster TM]] |
- | [[Category: White, M F]] | + | [[Category: Graham S]] |
- | [[Category: Crispr cyclic oligoadenylate dna anti-crispr viral]] | + | [[Category: McMahon SA]] |
- | [[Category: Dna]] | + | [[Category: White MF]] |
| Structural highlights
Function
Y114_SIRV1
Publication Abstract from PubMed
The CRISPR system in bacteria and archaea provides adaptive immunity against mobile genetic elements. Type III CRISPR systems detect viral RNA, resulting in the activation of two regions of the Cas10 protein: an HD nuclease domain (which degrades viral DNA)(1,2) and a cyclase domain (which synthesizes cyclic oligoadenylates from ATP)(3-5). Cyclic oligoadenylates in turn activate defence enzymes with a CRISPR-associated Rossmann fold domain(6), sculpting a powerful antiviral response(7-10) that can drive viruses to extinction(7,8). Cyclic nucleotides are increasingly implicated in host-pathogen interactions(11-13). Here we identify a new family of viral anti-CRISPR (Acr) enzymes that rapidly degrade cyclic tetra-adenylate (cA4). The viral ring nuclease AcrIII-1 is widely distributed in archaeal and bacterial viruses and in proviruses. The enzyme uses a previously unknown fold to bind cA4 specifically, and a conserved active site to rapidly cleave this signalling molecule, allowing viruses to neutralize the type III CRISPR defence system. The AcrIII-1 family has a broad host range, as it targets cA4 signalling molecules rather than specific CRISPR effector proteins. Our findings highlight the crucial role of cyclic nucleotide signalling in the conflict between viruses and their hosts.
An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity.,Athukoralage JS, McMahon SA, Zhang C, Gruschow S, Graham S, Krupovic M, Whitaker RJ, Gloster TM, White MF Nature. 2020 Jan;577(7791):572-575. doi: 10.1038/s41586-019-1909-5. Epub 2020 Jan, 15. PMID:31942067[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
References
- ↑ Athukoralage JS, McMahon SA, Zhang C, Gruschow S, Graham S, Krupovic M, Whitaker RJ, Gloster TM, White MF. An anti-CRISPR viral ring nuclease subverts type III CRISPR immunity. Nature. 2020 Jan;577(7791):572-575. doi: 10.1038/s41586-019-1909-5. Epub 2020 Jan, 15. PMID:31942067 doi:http://dx.doi.org/10.1038/s41586-019-1909-5
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