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| | <StructureSection load='6t3h' size='340' side='right'caption='[[6t3h]], [[Resolution|resolution]] 3.04Å' scene=''> | | <StructureSection load='6t3h' size='340' side='right'caption='[[6t3h]], [[Resolution|resolution]] 3.04Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[6t3h]] is a 2 chain structure with sequence from [http://en.wikipedia.org/wiki/Bacna Bacna]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T3H OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6T3H FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6t3h]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._natto Bacillus subtilis subsp. natto]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6T3H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6T3H FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">rapA ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=86029 BACNA])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3.039Å</td></tr> |
| - | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6t3h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t3h OCA], [http://pdbe.org/6t3h PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6t3h RCSB], [http://www.ebi.ac.uk/pdbsum/6t3h PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6t3h ProSAT]</span></td></tr> | + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6t3h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6t3h OCA], [https://pdbe.org/6t3h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6t3h RCSB], [https://www.ebi.ac.uk/pdbsum/6t3h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6t3h ProSAT]</span></td></tr> |
| | </table> | | </table> |
| | + | == Function == |
| | + | [https://www.uniprot.org/uniprot/E9RIY6_BACNA E9RIY6_BACNA] |
| | <div style="background-color:#fffaf0;"> | | <div style="background-color:#fffaf0;"> |
| | == Publication Abstract from PubMed == | | == Publication Abstract from PubMed == |
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| | </div> | | </div> |
| | <div class="pdbe-citations 6t3h" style="background-color:#fffaf0;"></div> | | <div class="pdbe-citations 6t3h" style="background-color:#fffaf0;"></div> |
| | + | |
| | + | ==See Also== |
| | + | *[[Response regulator 3D structure|Response regulator 3D structure]] |
| | == References == | | == References == |
| | <references/> | | <references/> |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| - | [[Category: Bacna]] | + | [[Category: Bacillus subtilis subsp. natto]] |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Bernardo, N]] | + | [[Category: Bernardo N]] |
| - | [[Category: Boer, D R]] | + | [[Category: Boer DR]] |
| - | [[Category: Crespo, I]] | + | [[Category: Crespo I]] |
| - | [[Category: Meijer, W J.J]] | + | [[Category: Meijer WJJ]] |
| - | [[Category: Conjugation]]
| + | |
| - | [[Category: Response regulator]]
| + | |
| - | [[Category: Transcription]]
| + | |
| Structural highlights
Function
E9RIY6_BACNA
Publication Abstract from PubMed
Quorum sensing allows bacterial cells to communicate through the release of soluble signaling molecules into the surrounding medium. It plays a pivotal role in controlling bacterial conjugation in Gram-positive cells, a process that has tremendous impact on health. Intracellular regulatory proteins of the RRNPP family are common targets of these signaling molecules. The RRNPP family of gene regulators bind signaling molecules at their C-terminal domain (CTD), but have highly divergent functionalities at their N-terminal effector domains (NTD). This divergence is also reflected in the functional states of the proteins, and is highly interesting from an evolutionary perspective. RappLS20 is an RRNPP encoded on the Bacillus subtilis plasmid pLS20. It relieves the gene repression effectuated by RcopLS20 in the absence of the mature pLS20 signaling peptide Phr*pLS20. We report here an in-depth structural study of apo and Phr*pLS20-bound states of RappLS20 at various levels of atomic detail. We show that apo-RappLS20 is dimeric and that Phr*pLS20-bound Rap forms NTD-mediated tetramers. In addition, we show that RappLS20 binds RcopLS20 directly in the absence of Phr*pLS20 and that addition of Phr*pLS20 releases RcopLS20 from RappLS20. This allows RcopLS20 to bind the promotor region of crucial conjugation genes blocking their expression.
Inactivation of the dimeric RappLS20 anti-repressor of the conjugation operon is mediated by peptide-induced tetramerization.,Crespo I, Bernardo N, Miguel-Arribas A, Singh PK, Luque-Ortega JR, Alfonso C, Malfois M, Meijer WJJ, Boer DR Nucleic Acids Res. 2020 Jul 13. pii: 5870671. doi: 10.1093/nar/gkaa540. PMID:32658272[1]
From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.
See Also
References
- ↑ Crespo I, Bernardo N, Miguel-Arribas A, Singh PK, Luque-Ortega JR, Alfonso C, Malfois M, Meijer WJJ, Boer DR. Inactivation of the dimeric RappLS20 anti-repressor of the conjugation operon is mediated by peptide-induced tetramerization. Nucleic Acids Res. 2020 Jul 13. pii: 5870671. doi: 10.1093/nar/gkaa540. PMID:32658272 doi:http://dx.doi.org/10.1093/nar/gkaa540
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