6tc5

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Current revision (12:59, 24 January 2024) (edit) (undo)
 
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<StructureSection load='6tc5' size='340' side='right'caption='[[6tc5]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='6tc5' size='340' side='right'caption='[[6tc5]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6tc5]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/Andropogon_sorghum Andropogon sorghum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TC5 OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=6TC5 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6tc5]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Sorghum_bicolor Sorghum bicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6TC5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6TC5 FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=O6E:3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic+acid'>O6E</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">PHYB, SORBI_3001G394400 ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=4558 Andropogon sorghum])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BME:BETA-MERCAPTOETHANOL'>BME</scene>, <scene name='pdbligand=O6E:3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic+acid'>O6E</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=6tc5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6tc5 OCA], [http://pdbe.org/6tc5 PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=6tc5 RCSB], [http://www.ebi.ac.uk/pdbsum/6tc5 PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=6tc5 ProSAT]</span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6tc5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6tc5 OCA], [https://pdbe.org/6tc5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6tc5 RCSB], [https://www.ebi.ac.uk/pdbsum/6tc5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6tc5 ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[http://www.uniprot.org/uniprot/Q6S527_SORBI Q6S527_SORBI]] Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region.[PIRNR:PIRNR000084]
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[https://www.uniprot.org/uniprot/PHYB_SORBI PHYB_SORBI] Regulatory photoreceptor which exists in two forms that are reversibly interconvertible by light: the Pr form that absorbs maximally in the red region of the spectrum and the Pfr form that absorbs maximally in the far-red region. Photoconversion of Pr to Pfr induces an array of morphogenic responses, whereas reconversion of Pfr to Pr cancels the induction of those responses. Pfr controls the expression of a number of nuclear genes including those encoding the small subunit of ribulose-bisphosphate carboxylase, chlorophyll A/B binding protein, protochlorophyllide reductase, rRNA, etc. It also controls the expression of its own gene(s) in a negative feedback fashion.[UniProtKB:P14713]
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<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Andropogon sorghum]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Guan, K]]
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[[Category: Sorghum bicolor]]
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[[Category: Hughes, J E]]
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[[Category: Guan K]]
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[[Category: Nagano, S]]
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[[Category: Hughes JE]]
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[[Category: Shenkutie, S M]]
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[[Category: Nagano S]]
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[[Category: Phytochrome]]
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[[Category: Shenkutie SM]]
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[[Category: Plant protein]]
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Current revision

Phytochromobilin-adducted PAS-GAF bidomain of Sorghum bicolor phyB

PDB ID 6tc5

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