6yc6

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==Structure of C. glutamicum GlnK==
==Structure of C. glutamicum GlnK==
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<StructureSection load='6yc6' size='340' side='right'caption='[[6yc6]]' scene=''>
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<StructureSection load='6yc6' size='340' side='right'caption='[[6yc6]], [[Resolution|resolution]] 2.20&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YC6 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6yc6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Corynebacterium_glutamicum Corynebacterium glutamicum]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YC6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YC6 FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yc6 OCA], [https://pdbe.org/6yc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yc6 RCSB], [https://www.ebi.ac.uk/pdbsum/6yc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yc6 ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.2&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=PO4:PHOSPHATE+ION'>PO4</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yc6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yc6 OCA], [https://pdbe.org/6yc6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yc6 RCSB], [https://www.ebi.ac.uk/pdbsum/6yc6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yc6 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/H7C694_CORGT H7C694_CORGT]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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PII proteins are ubiquitous signaling proteins that are involved in the regulation of the nitrogen/carbon balance in bacteria, archaea, and some plants and algae. Signal transduction via PII proteins is modulated by effector molecules and post-translational modifications in the PII T-loop. Whereas the binding of ADP, ATP and the concomitant binding of ATP and 2-oxoglutarate (2OG) engender two distinct conformations of the T-loop that either favor or disfavor the interaction with partner proteins, the structural consequences of post-translational modifications such as phosphorylation, uridylylation and adenylylation are far less well understood. In the present study, crystal structures of the PII protein GlnK from Corynebacterium glutamicum have been determined, namely of adenylylated GlnK (adGlnK) and unmodified unadenylylated GlnK (unGlnK). AdGlnK has been proposed to act as an inducer of the transcription repressor AmtR, and the adenylylation of Tyr51 in GlnK has been proposed to be a prerequisite for this function. The structures of unGlnK and adGlnK allow the first atomic insights into the structural implications of the covalent attachment of an AMP moiety to the T-loop. The overall GlnK fold remains unaltered upon adenylylation, and T-loop adenylylation does not appear to interfere with the formation of the two major functionally important T-loop conformations, namely the extended T-loop in the canonical ADP-bound state and the compacted T-loop that is adopted upon the simultaneous binding of Mg-ATP and 2OG. Thus, the PII-typical conformational switching mechanism appears to be preserved in GlnK from C. glutamicum, while at the same time the functional repertoire becomes expanded through the accommodation of a peculiar post-translational modification.
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Crystal structures of adenylylated and unadenylylated PII protein GlnK from Corynebacterium glutamicum.,Grau FC, Burkovski A, Muller YA Acta Crystallogr D Struct Biol. 2021 Mar 1;77(Pt 3):325-335. doi:, 10.1107/S2059798321000735. Epub 2021 Feb 19. PMID:33645536<ref>PMID:33645536</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 6yc6" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Corynebacterium glutamicum]]
[[Category: Large Structures]]
[[Category: Large Structures]]
[[Category: Grau FC]]
[[Category: Grau FC]]
[[Category: Muller YA]]
[[Category: Muller YA]]

Current revision

Structure of C. glutamicum GlnK

PDB ID 6yc6

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