6yj9
From Proteopedia
(Difference between revisions)
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==DarB in complex with 3'3'cGAMP== | ==DarB in complex with 3'3'cGAMP== | ||
| - | <StructureSection load='6yj9' size='340' side='right'caption='[[6yj9]]' scene=''> | + | <StructureSection load='6yj9' size='340' side='right'caption='[[6yj9]], [[Resolution|resolution]] 1.50Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YJ9 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6yj9]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Bacillus_subtilis_subsp._subtilis_str._168 Bacillus subtilis subsp. subtilis str. 168]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YJ9 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YJ9 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yj9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yj9 OCA], [https://pdbe.org/6yj9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yj9 RCSB], [https://www.ebi.ac.uk/pdbsum/6yj9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yj9 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.5Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4BW:2-AMINO-9-[(2R,3R,3AS,5R,7AR,9R,10R,10AS,12R,14AR)-9-(6-AMINO-9H-PURIN-9-YL)-3,5,10,12-TETRAHYDROXY-5,12-DIOXIDOOCTAHYDRO-2H,7H-DIFURO[3,2-D 3,2-J][1,3,7,9,2,8]TETRAOXADIPHOSPHACYCLODODECIN-2-YL]-1,9-DIHYDRO-6H-PURIN-6-ONE'>4BW</scene>, <scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6yj9 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6yj9 OCA], [https://pdbe.org/6yj9 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6yj9 RCSB], [https://www.ebi.ac.uk/pdbsum/6yj9 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6yj9 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/DARB_BACSU DARB_BACSU] Involved in the c-di-AMP-dependent regulation of the bacterial stringent response (PubMed:33619274, PubMed:35130724). Modulates the activities of at least two enzymes under conditions of potassium limitation (PubMed:33619274, PubMed:35130724). Apo-DarB regulates the activity of the GTP pyrophosphokinase RelA by interacting directly with RelA, leading to stimulation of (p)ppGpp synthesis and induction of the stringent response (PubMed:33619274). Apo-DarB also regulates pyruvate carboxylase (PYC) at two levels: directly at the protein level by binding to the enzyme and stimulating the synthesis of oxaloacetate and indirectly, by interaction with RelA, which leads to activation of the stringent response and to the increased expression of the pycA gene (PubMed:35130724). Stimulation of these enzymes by DarB is prevented in the presence of cyclic di-AMP (c-di-AMP) (PubMed:33619274, PubMed:35130724).<ref>PMID:33619274</ref> <ref>PMID:35130724</ref> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Bacillus subtilis subsp. subtilis str. 168]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Ficner R]] | [[Category: Ficner R]] | ||
[[Category: Heidemann JL]] | [[Category: Heidemann JL]] | ||
[[Category: Neumann P]] | [[Category: Neumann P]] | ||
Current revision
DarB in complex with 3'3'cGAMP
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