6ymf

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Current revision (13:30, 24 January 2024) (edit) (undo)
 
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<StructureSection load='6ymf' size='340' side='right'caption='[[6ymf]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
<StructureSection load='6ymf' size='340' side='right'caption='[[6ymf]], [[Resolution|resolution]] 1.63&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[6ymf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aphha Aphha]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YMF FirstGlance]. <br>
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<table><tr><td colspan='2'>[[6ymf]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aphanothece_halophytica Aphanothece halophytica]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6YMF OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6YMF FirstGlance]. <br>
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</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PLS:[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE'>PLS</scene></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.63&#8491;</td></tr>
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<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">glyrA, glyA ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=72020 APHHA])</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1PE:PENTAETHYLENE+GLYCOL'>1PE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PLS:[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHYL]-SERINE'>PLS</scene></td></tr>
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<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Glycine_hydroxymethyltransferase Glycine hydroxymethyltransferase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=2.1.2.1 2.1.2.1] </span></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ymf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ymf OCA], [https://pdbe.org/6ymf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ymf RCSB], [https://www.ebi.ac.uk/pdbsum/6ymf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ymf ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6ymf FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6ymf OCA], [https://pdbe.org/6ymf PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6ymf RCSB], [https://www.ebi.ac.uk/pdbsum/6ymf PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6ymf ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/I7H6W6_APHHA I7H6W6_APHHA]] Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.[HAMAP-Rule:MF_00051]
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[https://www.uniprot.org/uniprot/I7H6W6_APHHA I7H6W6_APHHA] Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism.[HAMAP-Rule:MF_00051]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
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==See Also==
==See Also==
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*[[Serine hydroxymethyltransferase|Serine hydroxymethyltransferase]]
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*[[Serine hydroxymethyltransferase 3D structures|Serine hydroxymethyltransferase 3D structures]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Aphha]]
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[[Category: Aphanothece halophytica]]
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[[Category: Glycine hydroxymethyltransferase]]
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[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Angelaccio, S]]
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[[Category: Angelaccio S]]
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[[Category: Contestabile, R]]
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[[Category: Contestabile R]]
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[[Category: Nogues, I]]
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[[Category: Nogues I]]
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[[Category: Ruszkowski, M]]
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[[Category: Ruszkowski M]]
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[[Category: Sekula, B]]
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[[Category: Sekula B]]
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[[Category: Tramonti, A]]
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[[Category: Tramonti A]]
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[[Category: Glycine]]
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[[Category: One-carbon metabolism]]
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[[Category: Plp]]
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[[Category: Serine biosynthesis]]
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[[Category: Tetrahydrofolate]]
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[[Category: Transferase]]
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Current revision

Crystal structure of serine hydroxymethyltransferase from Aphanothece halophytica in the PLP-Serine external aldimine state

PDB ID 6ymf

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