6z8h
From Proteopedia
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==Crystal structure of Variant Surface Glycoprotein VSG13== | ==Crystal structure of Variant Surface Glycoprotein VSG13== | ||
| - | <StructureSection load='6z8h' size='340' side='right'caption='[[6z8h]]' scene=''> | + | <StructureSection load='6z8h' size='340' side='right'caption='[[6z8h]], [[Resolution|resolution]] 1.38Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z8H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Z8H FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6z8h]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trypanosoma_brucei Trypanosoma brucei]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6Z8H OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6Z8H FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6z8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z8h OCA], [https://pdbe.org/6z8h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6z8h RCSB], [https://www.ebi.ac.uk/pdbsum/6z8h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6z8h ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.38Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6z8h FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6z8h OCA], [https://pdbe.org/6z8h PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6z8h RCSB], [https://www.ebi.ac.uk/pdbsum/6z8h PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6z8h ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q58NS4_9TRYP Q58NS4_9TRYP] VSG forms a coat on the surface of the parasite. The trypanosome evades the immune response of the host by expressing a series of antigenically distinct VSGs from an estimated 1000 VSG genes.[ARBA:ARBA00002523] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Suramin has been a primary early-stage treatment for African trypanosomiasis for nearly 100 yr. Recent studies revealed that trypanosome strains that express the variant surface glycoprotein (VSG) VSGsur possess heightened resistance to suramin. Here, we show that VSGsur binds tightly to suramin but other VSGs do not. By solving high-resolution crystal structures of VSGsur and VSG13, we also demonstrate that these VSGs define a structurally divergent subgroup of the coat proteins. The co-crystal structure of VSGsur with suramin reveals that the chemically symmetric drug binds within a large cavity in the VSG homodimer asymmetrically, primarily through contacts of its central benzene rings. Structure-based, loss-of-contact mutations in VSGsur significantly decrease the affinity to suramin and lead to a loss of the resistance phenotype. Altogether, these data show that the resistance phenotype is dependent on the binding of suramin to VSGsur, establishing that the VSG proteins can possess functionality beyond their role in antigenic variation. | ||
| + | |||
| + | Structure of trypanosome coat protein VSGsur and function in suramin resistance.,Zeelen J, van Straaten M, Verdi J, Hempelmann A, Hashemi H, Perez K, Jeffrey PD, Halg S, Wiedemar N, Maser P, Papavasiliou FN, Stebbins CE Nat Microbiol. 2021 Mar;6(3):392-400. doi: 10.1038/s41564-020-00844-1. Epub 2021 , Jan 18. PMID:33462435<ref>PMID:33462435</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6z8h" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Trypanosoma brucei]] | ||
[[Category: Hempelmann A]] | [[Category: Hempelmann A]] | ||
[[Category: Stebbins CE]] | [[Category: Stebbins CE]] | ||
[[Category: Van Straaten M]] | [[Category: Van Straaten M]] | ||
[[Category: Zeelen J]] | [[Category: Zeelen J]] | ||
Revision as of 13:43, 24 January 2024
Crystal structure of Variant Surface Glycoprotein VSG13
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