6zc1
From Proteopedia
(Difference between revisions)
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==Crystal structure of RahU protein from Pseudomonas aeruginosa== | ==Crystal structure of RahU protein from Pseudomonas aeruginosa== | ||
- | <StructureSection load='6zc1' size='340' side='right'caption='[[6zc1]]' scene=''> | + | <StructureSection load='6zc1' size='340' side='right'caption='[[6zc1]], [[Resolution|resolution]] 1.27Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZC1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZC1 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6zc1]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Pseudomonas_aeruginosa_PAO1 Pseudomonas aeruginosa PAO1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZC1 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZC1 FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zc1 OCA], [https://pdbe.org/6zc1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zc1 RCSB], [https://www.ebi.ac.uk/pdbsum/6zc1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zc1 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.27Å</td></tr> |
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zc1 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zc1 OCA], [https://pdbe.org/6zc1 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zc1 RCSB], [https://www.ebi.ac.uk/pdbsum/6zc1 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zc1 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q9I710_PSEAE Q9I710_PSEAE] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Aegerolysins are proteins produced by bacteria, fungi, plants and protozoa. The most studied fungal aegerolysins share a common property of interacting with membranes enriched with cholesterol in combination with either sphingomyelin or ceramide phosphorylethanolamine (CPE), major sphingolipids in the cell membranes of vertebrates and invertebrates, respectively. However, genome analyses show a particularly high frequency of aegerolysin genes in bacteria, including the pathogenic genera Pseudomonas and Vibrio; these are human pathogens of high clinical relevance and can thrive in a variety of other species. The knowledge on bacterial aegerolysin-lipid interactions is scarce. We show that Pseudomonas aeruginosa aegerolysin RahU interacts with CPE, but not with sphingomyelin-enriched artificial membranes, and that RahU interacts with the insect cell line producing CPE. We report crystal structures of RahU alone and in complex with tris(hydroxymethyl)aminomethane (Tris), which, like the phosphorylethanolamine head group of CPE, contains a primary amine. The RahU structures reveal that the two loops proximal to the amino terminus form a cavity that accommodates Tris, and that the flexibility of these two loops is important for this interaction. We show that Tris interferes with CPE-enriched membranes for binding to RahU, implying on the importance of the ligand cavity between the loops and its proximity in RahU membrane interaction. We further support this by studying the interaction of single amino acid substitution mutants of RahU with the CPE-enriched membranes. Our results thus represent a starting point for a better understanding of the role of P. aeruginosa RahU, and possibly other bacterial aegerolysins, in bacterial interactions with other organisms. | ||
+ | |||
+ | Crystal structure of RahU, an aegerolysin protein from the human pathogen Pseudomonas aeruginosa, and its interaction with membrane ceramide phosphorylethanolamine.,Kocar E, Lenarcic T, Hodnik V, Panevska A, Huang Y, Bajc G, Kostanjsek R, Naren AP, Macek P, Anderluh G, Sepcic K, Podobnik M, Butala M Sci Rep. 2021 Mar 22;11(1):6572. doi: 10.1038/s41598-021-85956-2. PMID:33753805<ref>PMID:33753805</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 6zc1" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
+ | [[Category: Pseudomonas aeruginosa PAO1]] | ||
[[Category: Anderluh G]] | [[Category: Anderluh G]] | ||
[[Category: Lenarcic T]] | [[Category: Lenarcic T]] | ||
[[Category: Podobnik M]] | [[Category: Podobnik M]] |
Current revision
Crystal structure of RahU protein from Pseudomonas aeruginosa
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