3iys

From Proteopedia

(Difference between revisions)

Revision as of 14:11, 24 January 2024

Homology model of avian polyomavirus asymmetric unit

3iys, resolution 11.30Å

Structural highlights

3iys is a 6 chain structure with sequence from Aves polyomavirus 1. Full crystallographic information is available from OCA. For a guided tour on the structure components use FirstGlance.
Method:	Electron Microscopy, Resolution 11.3Å
Experimental data:	Check to display Experimental Data
Resources:	FirstGlance, OCA, PDBe, RCSB, PDBsum, ProSAT

Function

VP1_BFPYV Forms an icosahedral capsid with a T=7 symmetry and a 46-48 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with VP2 or VP3 proteins. Interacts with sialic acids on the cell surface to provide virion attachment to target cell. Once attached, the virion is internalized by endocytosis and traffics to the endoplasmic reticulum. Inside the endoplasmic reticulum, the protein folding machinery isomerizes VP1 interpentamer disulfide bonds, thereby triggering initial uncoating. Next, the virion uses the endoplasmic reticulum-associated degradation machinery to probably translocate in the cytosol before reaching the nucleus. Nuclear entry of the viral DNA involves the selective exposure and importin recognition of VP2/Vp3 nuclear localization signal. In late phase of infection, neo-synthesized VP1 encapsulates replicated genomic DNA in the nucleus, and participates in rearranging nucleosomes around the viral DNA (By similarity).

Publication Abstract from PubMed

Avian polyomavirus (APV) causes a fatal, multi-organ disease among several bird species. Using cryogenic electron microscopy and other biochemical techniques, we investigated the structure of APV and compared it to that of mammalian polyomaviruses, particularly JC polyomavirus and simian virus 40. The structure of the pentameric major capsid protein (VP1) is mostly conserved; however, APV VP1 has a unique, truncated C-terminus that eliminates an intercapsomere-connecting beta-hairpin observed in other polyomaviruses. We postulate that the terminal beta-hairpin locks other polyomavirus capsids in a stable conformation and that absence of the hairpin leads to the observed capsid size variation in APV. Plug-like density features were observed at the base of the VP1 pentamers, consistent with the known location of minor capsid proteins VP2 and VP3. However, the plug density is more prominent in APV and may include VP4, a minor capsid protein unique to bird polyomaviruses.

The structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interactions, and a possible location of the minor capsid protein VP4.,Shen PS, Enderlein D, Nelson CD, Carter WS, Kawano M, Xing L, Swenson RD, Olson NH, Baker TS, Cheng RH, Atwood WJ, Johne R, Belnap DM Virology. 2011 Jan 14. PMID:21239031^[1]

From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.

References

↑ Shen PS, Enderlein D, Nelson CD, Carter WS, Kawano M, Xing L, Swenson RD, Olson NH, Baker TS, Cheng RH, Atwood WJ, Johne R, Belnap DM. The structure of avian polyomavirus reveals variably sized capsids, non-conserved inter-capsomere interactions, and a possible location of the minor capsid protein VP4. Virology. 2011 Jan 14. PMID:21239031 doi:10.1016/j.virol.2010.12.005

1 Structural highlights
2 Function
3 Publication Abstract from PubMed
4 See Also
5 References

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/3iys"

@@ Line 3: / Line 3: @@
 <SX load='3iys' size='340' side='right' viewer='molstar' caption='[[3iys]], [[Resolution|resolution]] 11.30&Aring;' scene=''>
 == Structural highlights ==
-<table><tr><td colspan='2'>[[3iys]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Budgerigar_fledgling_disease_polyomavirus Budgerigar fledgling disease polyomavirus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IYS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IYS FirstGlance]. <br>
+<table><tr><td colspan='2'>[[3iys]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Aves_polyomavirus_1 Aves polyomavirus 1]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3IYS OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3IYS FirstGlance]. <br>
-</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1sie|1sie]]</div></td></tr>
+</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron Microscopy, [[Resolution|Resolution]] 11.3&#8491;</td></tr>
 <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3iys FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3iys OCA], [https://pdbe.org/3iys PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3iys RCSB], [https://www.ebi.ac.uk/pdbsum/3iys PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3iys ProSAT]</span></td></tr>
 </table>
 == Function ==
-[[https://www.uniprot.org/uniprot/VP1_BFPYV VP1_BFPYV]] Forms an icosahedral capsid with a T=7 symmetry and a 46-48 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with VP2 or VP3 proteins. Interacts with sialic acids on the cell surface to provide virion attachment to target cell. Once attached, the virion is internalized by endocytosis and traffics to the endoplasmic reticulum. Inside the endoplasmic reticulum, the protein folding machinery isomerizes VP1 interpentamer disulfide bonds, thereby triggering initial uncoating. Next, the virion uses the endoplasmic reticulum-associated degradation machinery to probably translocate in the cytosol before reaching the nucleus. Nuclear entry of the viral DNA involves the selective exposure and importin recognition of VP2/Vp3 nuclear localization signal. In late phase of infection, neo-synthesized VP1 encapsulates replicated genomic DNA in the nucleus, and participates in rearranging nucleosomes around the viral DNA (By similarity).
+[https://www.uniprot.org/uniprot/VP1_BFPYV VP1_BFPYV] Forms an icosahedral capsid with a T=7 symmetry and a 46-48 nm diameter. The capsid is composed of 72 pentamers linked to each other by disulfide bonds and associated with VP2 or VP3 proteins. Interacts with sialic acids on the cell surface to provide virion attachment to target cell. Once attached, the virion is internalized by endocytosis and traffics to the endoplasmic reticulum. Inside the endoplasmic reticulum, the protein folding machinery isomerizes VP1 interpentamer disulfide bonds, thereby triggering initial uncoating. Next, the virion uses the endoplasmic reticulum-associated degradation machinery to probably translocate in the cytosol before reaching the nucleus. Nuclear entry of the viral DNA involves the selective exposure and importin recognition of VP2/Vp3 nuclear localization signal. In late phase of infection, neo-synthesized VP1 encapsulates replicated genomic DNA in the nucleus, and participates in rearranging nucleosomes around the viral DNA (By similarity).
 <div style="background-color:#fffaf0;">
 == Publication Abstract from PubMed ==
@@ Line 25: / Line 25: @@
 __TOC__
 </SX>
-[[Category: Budgerigar fledgling disease polyomavirus]]
+[[Category: Aves polyomavirus 1]]
 [[Category: Large Structures]]
-[[Category: Atwood, W J]]
+[[Category: Atwood WJ]]
-[[Category: Baker, T S]]
+[[Category: Baker TS]]
-[[Category: Belnap, D M]]
+[[Category: Belnap DM]]
-[[Category: Carter, W S]]
+[[Category: Carter WS]]
-[[Category: Cheng, R H]]
+[[Category: Cheng RH]]
-[[Category: Enderlein, D]]
+[[Category: Enderlein D]]
-[[Category: Johne, R]]
+[[Category: Johne R]]
-[[Category: Kawano, M]]
+[[Category: Kawano M]]
-[[Category: Nelson, C D.S]]
+[[Category: Nelson CDS]]
-[[Category: Olson, N H]]
+[[Category: Olson NH]]
-[[Category: Shen, P S]]
+[[Category: Shen PS]]
-[[Category: Swenson, R D]]
+[[Category: Swenson RD]]
-[[Category: Xing, L]]
+[[Category: Xing L]]
-[[Category: Apv]]
-[[Category: Avian]]
-[[Category: Icosahedral virus]]
-[[Category: Polyomavirus]]
-[[Category: Virus]]

3iys

From Proteopedia

Revision as of 14:11, 24 January 2024

Homology model of avian polyomavirus asymmetric unit

Structural highlights

Function

Publication Abstract from PubMed

See Also

References

Contents

Proteopedia Page Contributors and Editors (what is this?)

Views

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