6zz5
From Proteopedia
(Difference between revisions)
| Line 1: | Line 1: | ||
==Structure of soluble SmhB of the tripartite alpha-pore forming toxin, Smh, from Serratia marcescens.== | ==Structure of soluble SmhB of the tripartite alpha-pore forming toxin, Smh, from Serratia marcescens.== | ||
| - | <StructureSection load='6zz5' size='340' side='right'caption='[[6zz5]]' scene=''> | + | <StructureSection load='6zz5' size='340' side='right'caption='[[6zz5]], [[Resolution|resolution]] 1.84Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZZ5 FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[6zz5]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Serratia_marcescens Serratia marcescens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=6ZZ5 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=6ZZ5 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zz5 OCA], [https://pdbe.org/6zz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zz5 RCSB], [https://www.ebi.ac.uk/pdbsum/6zz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zz5 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.84Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=SO4:SULFATE+ION'>SO4</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=6zz5 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=6zz5 OCA], [https://pdbe.org/6zz5 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=6zz5 RCSB], [https://www.ebi.ac.uk/pdbsum/6zz5 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=6zz5 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/A0A1Q4NVM7_SERMA A0A1Q4NVM7_SERMA] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Tripartite members of the ClyA family of alpha-PFTs have recently been identified in a number of pathogenic Gram-negative bacteria, including the human pathogen Serratia marcescens. Structures of a Gram-negative A component and a tripartite alpha-PFT complete pore are unknown and a mechanism for pore formation is still uncertain. Here we characterise the tripartite SmhABC toxin from S. marcescens and propose a mechanism of pore assembly. We present the structure of soluble SmhA, as well as the soluble and pore forms of SmhB. We show that the beta-tongue soluble structure is well conserved in the family and propose two conserved latches between the head and tail domains that are broken on the soluble to pore conformational change. Using the structures of individual components, sequence analysis and docking predictions we illustrate how the A, B and C protomers would assemble on the membrane to produce a complete tripartite alpha-PFT pore. | ||
| + | |||
| + | Characterisation of a tripartite alpha-pore forming toxin from Serratia marcescens.,Churchill-Angus AM, Schofield THB, Marlow TR, Sedelnikova SE, Wilson JS, Rafferty JB, Baker PJ Sci Rep. 2021 Mar 19;11(1):6447. doi: 10.1038/s41598-021-85726-0. PMID:33742033<ref>PMID:33742033</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 6zz5" style="background-color:#fffaf0;"></div> | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| + | [[Category: Serratia marcescens]] | ||
[[Category: Baker PJ]] | [[Category: Baker PJ]] | ||
[[Category: Churchill-Angus AM]] | [[Category: Churchill-Angus AM]] | ||
Current revision
Structure of soluble SmhB of the tripartite alpha-pore forming toxin, Smh, from Serratia marcescens.
| |||||||||||
