7a9a

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==Crystal structure of rubredoxin B (Rv3250c) from Mycobacterium tuberculosis==
==Crystal structure of rubredoxin B (Rv3250c) from Mycobacterium tuberculosis==
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<StructureSection load='7a9a' size='340' side='right'caption='[[7a9a]]' scene=''>
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<StructureSection load='7a9a' size='340' side='right'caption='[[7a9a]], [[Resolution|resolution]] 1.17&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A9A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A9A FirstGlance]. <br>
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<table><tr><td colspan='2'>[[7a9a]] is a 8 chain structure with sequence from [https://en.wikipedia.org/wiki/Mycobacterium_tuberculosis_H37Rv Mycobacterium tuberculosis H37Rv]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7A9A OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7A9A FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a9a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a9a OCA], [https://pdbe.org/7a9a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a9a RCSB], [https://www.ebi.ac.uk/pdbsum/7a9a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a9a ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.17&#8491;</td></tr>
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<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CL:CHLORIDE+ION'>CL</scene>, <scene name='pdbligand=EDO:1,2-ETHANEDIOL'>EDO</scene>, <scene name='pdbligand=FE:FE+(III)+ION'>FE</scene>, <scene name='pdbligand=GOL:GLYCEROL'>GOL</scene>, <scene name='pdbligand=PEG:DI(HYDROXYETHYL)ETHER'>PEG</scene>, <scene name='pdbligand=ZN:ZINC+ION'>ZN</scene></td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7a9a FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7a9a OCA], [https://pdbe.org/7a9a PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7a9a RCSB], [https://www.ebi.ac.uk/pdbsum/7a9a PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7a9a ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/I6YFL7_MYCTU I6YFL7_MYCTU] Involved in the hydrocarbon hydroxylating system, which transfers electrons from NADH to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase.[ARBA:ARBA00002792]
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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Electron transfer mediated by metalloproteins drives many biological processes. Rubredoxins are a ubiquitous [1Fe-0S] class of electron carriers that play an important role in bacterial adaptation to changing environmental conditions. In Mycobacterium tuberculosis, oxidative and acidic stresses as well as iron starvation induce rubredoxins expression. However, their functions during M. tuberculosis infection are unknown. In the present work, we show that rubredoxin B (RubB) is able to efficiently shuttle electrons from cognate reductases, FprA and FdR to support catalytic activity of cytochrome P450s, CYP124, CYP125, and CYP142, which are important for bacterial viability and pathogenicity. We solved the crystal structure of RubB and characterized the interaction between RubB and CYPs using site-directed mutagenesis. Mutations that not only neutralize single charge but also change the specific residues on the surface of RubB did not dramatically decrease activity of studied CYPs. Together with isothermal calorimetry (ITC) experiments, the obtained results suggest that interactions are transient and not highly specific. The redox potential of RubB is -264 mV vs. Ag/AgCl and the measured extinction coefficients are 9931 M(-1)cm(-1) and 8371 M(-1)cm(-1) at 380 nm and 490 nm, respectively. Characteristic parameters of RubB along with the discovered function might be useful for biotechnological applications. Our findings suggest that a switch from ferredoxins to rubredoxins might be crucial for M. tuberculosis to support CYPs activity during the infection.
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A new twist of rubredoxin function in M. tuberculosis.,Sushko T, Kavaleuski A, Grabovec I, Kavaleuskaya A, Vakhrameev D, Bukhdruker S, Marin E, Kuzikov A, Masamrekh R, Shumyantseva V, Tsumoto K, Borshchevskiy V, Gilep A, Strushkevich N Bioorg Chem. 2021 Feb 11;109:104721. doi: 10.1016/j.bioorg.2021.104721. PMID:33618255<ref>PMID:33618255</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 7a9a" style="background-color:#fffaf0;"></div>
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==See Also==
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*[[Rubredoxin 3D structures|Rubredoxin 3D structures]]
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== References ==
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<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Mycobacterium tuberculosis H37Rv]]
[[Category: Borshchevskiy V]]
[[Category: Borshchevskiy V]]
[[Category: Bukhdruker S]]
[[Category: Bukhdruker S]]

Current revision

Crystal structure of rubredoxin B (Rv3250c) from Mycobacterium tuberculosis

PDB ID 7a9a

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