7beq

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Line 3: Line 3:
<StructureSection load='7beq' size='340' side='right'caption='[[7beq]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
<StructureSection load='7beq' size='340' side='right'caption='[[7beq]], [[Resolution|resolution]] 3.00&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7beq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Human Human]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BEQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BEQ FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7beq]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Homo_sapiens Homo sapiens]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7BEQ OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7BEQ FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">MYD88 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=9606 HUMAN])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">Electron crystallography, [[Resolution|Resolution]] 3&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7beq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7beq OCA], [https://pdbe.org/7beq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7beq RCSB], [https://www.ebi.ac.uk/pdbsum/7beq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7beq ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7beq FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7beq OCA], [https://pdbe.org/7beq PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7beq RCSB], [https://www.ebi.ac.uk/pdbsum/7beq PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7beq ProSAT]</span></td></tr>
</table>
</table>
== Disease ==
== Disease ==
-
[[https://www.uniprot.org/uniprot/MYD88_HUMAN MYD88_HUMAN]] Defects in MYD88 are the cause of MYD88 deficiency (MYD88D) [MIM:[https://omim.org/entry/612260 612260]]; also known as recurrent pyogenic bacterial infections due to MYD88 deficiency. Patients suffer from autosomal recessive, life-threatening, often recurrent pyogenic bacterial infections, including invasive pneumococcal disease, and die between 1 and 11 months of age. Surviving patients are otherwise healthy, with normal resistance to other microbes, and their clinical status improved with age.<ref>PMID:19506249</ref> <ref>PMID:18669862</ref>
+
[https://www.uniprot.org/uniprot/MYD88_HUMAN MYD88_HUMAN] Defects in MYD88 are the cause of MYD88 deficiency (MYD88D) [MIM:[https://omim.org/entry/612260 612260]; also known as recurrent pyogenic bacterial infections due to MYD88 deficiency. Patients suffer from autosomal recessive, life-threatening, often recurrent pyogenic bacterial infections, including invasive pneumococcal disease, and die between 1 and 11 months of age. Surviving patients are otherwise healthy, with normal resistance to other microbes, and their clinical status improved with age.<ref>PMID:19506249</ref> <ref>PMID:18669862</ref>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/MYD88_HUMAN MYD88_HUMAN]] Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. Acts via IRAK1, IRAK2, IRF7 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Increases IL-8 transcription. Involved in IL-18-mediated signaling pathway. Activates IRF1 resulting in its rapid migration into the nucleus to mediate an efficient induction of IFN-beta, NOS2/INOS, and IL12A genes (By similarity).<ref>PMID:9013863</ref> <ref>PMID:15361868</ref> <ref>PMID:18292575</ref> <ref>PMID:19506249</ref>
+
[https://www.uniprot.org/uniprot/MYD88_HUMAN MYD88_HUMAN] Adapter protein involved in the Toll-like receptor and IL-1 receptor signaling pathway in the innate immune response. Acts via IRAK1, IRAK2, IRF7 and TRAF6, leading to NF-kappa-B activation, cytokine secretion and the inflammatory response. Increases IL-8 transcription. Involved in IL-18-mediated signaling pathway. Activates IRF1 resulting in its rapid migration into the nucleus to mediate an efficient induction of IFN-beta, NOS2/INOS, and IL12A genes (By similarity).<ref>PMID:9013863</ref> <ref>PMID:15361868</ref> <ref>PMID:18292575</ref> <ref>PMID:19506249</ref>
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 20: Line 20:
</div>
</div>
<div class="pdbe-citations 7beq" style="background-color:#fffaf0;"></div>
<div class="pdbe-citations 7beq" style="background-color:#fffaf0;"></div>
 +
 +
==See Also==
 +
*[[TIR domain-containing adapter protein|TIR domain-containing adapter protein]]
== References ==
== References ==
<references/>
<references/>
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Human]]
+
[[Category: Homo sapiens]]
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Abbey, B]]
+
[[Category: Abbey B]]
-
[[Category: Aquila, A]]
+
[[Category: Aquila A]]
-
[[Category: Clabbers, M T.B]]
+
[[Category: Clabbers MTB]]
-
[[Category: Croll, T I]]
+
[[Category: Croll TI]]
-
[[Category: Darmanin, C]]
+
[[Category: Darmanin C]]
-
[[Category: Gambin, Y]]
+
[[Category: Gambin Y]]
-
[[Category: Holmes, S]]
+
[[Category: Holmes S]]
-
[[Category: Hunter, D J.B]]
+
[[Category: Hunter DJB]]
-
[[Category: Hunter, M S]]
+
[[Category: Hunter MS]]
-
[[Category: Kobe, B]]
+
[[Category: Kobe B]]
-
[[Category: Liang, M]]
+
[[Category: Liang M]]
-
[[Category: Malde, A K]]
+
[[Category: Malde AK]]
-
[[Category: Muusse, T W]]
+
[[Category: Muusse TW]]
-
[[Category: Nanson, J D]]
+
[[Category: Nanson JD]]
-
[[Category: Rahaman, M H]]
+
[[Category: Rahaman MH]]
-
[[Category: Sierecki, E]]
+
[[Category: Sierecki E]]
-
[[Category: Thygesen, S J]]
+
[[Category: Thygesen SJ]]
-
[[Category: Vajjhala, P]]
+
[[Category: Vajjhala P]]
-
[[Category: Ve, T]]
+
[[Category: Ve T]]
-
[[Category: Xu, H]]
+
[[Category: Xu H]]
-
[[Category: Yoon, C H]]
+
[[Category: Yoon CH]]
-
[[Category: Zatsepin, N A]]
+
[[Category: Zatsepin NA]]
-
[[Category: Zhao, J]]
+
[[Category: Zhao J]]
-
[[Category: Higher-order assembly]]
+
-
[[Category: Microed]]
+
-
[[Category: Myd88]]
+
-
[[Category: Protein binding]]
+
-
[[Category: Tir domain]]
+

Revision as of 12:27, 1 February 2024

MicroED structure of the MyD88 TIR domain higher-order assembly

PDB ID 7beq

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools