This old version of Proteopedia is provided for student assignments while the new version is undergoing repairs. Content and edits done in this old version of Proteopedia after March 1, 2026 will eventually be lost when it is retired in about June of 2026.

Apply for new accounts at the new Proteopedia. Your logins will work in both the old and new versions.


7ney

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (12:34, 1 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='7ney' size='340' side='right'caption='[[7ney]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
<StructureSection load='7ney' size='340' side='right'caption='[[7ney]], [[Resolution|resolution]] 1.74&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[7ney]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Hypai Hypai]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NEY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NEY FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[7ney]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Trichoderma_atroviride_IMI_206040 Trichoderma atroviride IMI 206040]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7NEY OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7NEY FirstGlance]. <br>
-
</td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4LU:1-DEOXY-5-O-PHOSPHONO-1-(3,3,4,5-TETRAMETHYL-9,11-DIOXO-2,3,8,9,10,11-HEXAHYDRO-7H-QUINOLINO[1,8-FG]PTERIDIN-12-IUM-7-YL)-D-RIBITOL'>4LU</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.74&#8491;</td></tr>
-
<tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">FDC1, TRIATDRAFT_53567 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=452589 HYPAI])</td></tr>
+
<tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=4LU:1-DEOXY-5-O-PHOSPHONO-1-(3,3,4,5-TETRAMETHYL-9,11-DIOXO-2,3,8,9,10,11-HEXAHYDRO-7H-QUINOLINO[1,8-FG]PTERIDIN-12-IUM-7-YL)-D-RIBITOL'>4LU</scene>, <scene name='pdbligand=K:POTASSIUM+ION'>K</scene>, <scene name='pdbligand=MN:MANGANESE+(II)+ION'>MN</scene></td></tr>
-
<tr id='activity'><td class="sblockLbl"><b>Activity:</b></td><td class="sblockDat"><span class='plainlinks'>[https://en.wikipedia.org/wiki/Phenacrylate_decarboxylase Phenacrylate decarboxylase], with EC number [https://www.brenda-enzymes.info/php/result_flat.php4?ecno=4.1.1.102 4.1.1.102] </span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ney FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ney OCA], [https://pdbe.org/7ney PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ney RCSB], [https://www.ebi.ac.uk/pdbsum/7ney PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ney ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7ney FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7ney OCA], [https://pdbe.org/7ney PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7ney RCSB], [https://www.ebi.ac.uk/pdbsum/7ney PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7ney ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[https://www.uniprot.org/uniprot/G9NLP8_HYPAI G9NLP8_HYPAI]] Catalyzes the reversible decarboxylation of aromatic carboxylic acids like ferulic acid, p-coumaric acid or cinnamic acid, producing the corresponding vinyl derivatives 4-vinylphenol, 4-vinylguaiacol, and styrene, respectively, which play the role of aroma metabolites.[HAMAP-Rule:MF_03196]
+
[https://www.uniprot.org/uniprot/G9NLP8_HYPAI G9NLP8_HYPAI] Catalyzes the reversible decarboxylation of aromatic carboxylic acids like ferulic acid, p-coumaric acid or cinnamic acid, producing the corresponding vinyl derivatives 4-vinylphenol, 4-vinylguaiacol, and styrene, respectively, which play the role of aroma metabolites.[HAMAP-Rule:MF_03196]
<div style="background-color:#fffaf0;">
<div style="background-color:#fffaf0;">
== Publication Abstract from PubMed ==
== Publication Abstract from PubMed ==
Line 24: Line 23:
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Hypai]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Phenacrylate decarboxylase]]
+
[[Category: Trichoderma atroviride IMI 206040]]
-
[[Category: Leys, D]]
+
[[Category: Leys D]]
-
[[Category: Saaret, A]]
+
[[Category: Saaret A]]
-
[[Category: Decarboxylase]]
+
-
[[Category: Lyase]]
+
-
[[Category: Prfmn]]
+

Current revision

Structure of T. atroviride Fdc wild-type (TaFdc) in complex with prFMN

PDB ID 7ney

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Retrieved from "http://52.214.119.220/wiki/index.php/7ney"
Personal tools