7pjd
From Proteopedia
(Difference between revisions)
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==The X-ray structure of juvenile hormone diol kinase from the silk worm Bombyx mori.== | ==The X-ray structure of juvenile hormone diol kinase from the silk worm Bombyx mori.== | ||
- | <StructureSection load='7pjd' size='340' side='right'caption='[[7pjd]]' scene=''> | + | <StructureSection load='7pjd' size='340' side='right'caption='[[7pjd]], [[Resolution|resolution]] 1.99Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PJD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PJD FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7pjd]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Bombyx_mori Bombyx mori]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PJD OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PJD FirstGlance]. <br> |
- | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pjd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pjd OCA], [https://pdbe.org/7pjd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pjd RCSB], [https://www.ebi.ac.uk/pdbsum/7pjd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pjd ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.99Å</td></tr> |
+ | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=CA:CALCIUM+ION'>CA</scene></td></tr> | ||
+ | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7pjd FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7pjd OCA], [https://pdbe.org/7pjd PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7pjd RCSB], [https://www.ebi.ac.uk/pdbsum/7pjd PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7pjd ProSAT]</span></td></tr> | ||
</table> | </table> | ||
+ | == Function == | ||
+ | [https://www.uniprot.org/uniprot/Q6URH4_BOMMO Q6URH4_BOMMO] | ||
+ | <div style="background-color:#fffaf0;"> | ||
+ | == Publication Abstract from PubMed == | ||
+ | Insect juvenile hormones (JHs) are a family of sesquiterpenoid molecules that are secreted into the haemolymph. JHs have multiple roles in insect development, metamorphosis and sexual maturation. A number of pesticides work by chemically mimicking JHs, thus preventing insects from developing and reproducing normally. The haemolymph levels of JH are governed by the rates of its biosynthesis and degradation. One enzyme involved in JH catabolism is JH diol kinase (JHDK), which uses ATP (or GTP) to phosphorylate JH diol to JH diol phosphate, which can be excreted. The X-ray structure of JHDK from the silkworm Bombyx mori has been determined at a resolution of 2.0 A with an R factor of 19.0% and an Rfree of 24.8%. The structure possesses three EF-hand motifs which are occupied by calcium ions. This is in contrast to the recently reported structure of the JHDK-like-2 protein from B. mori (PDB entry 6kth), which possessed only one calcium ion. Since JHDK is known to be inhibited by calcium ions, it is likely that our structure represents the calcium-inhibited form of the enzyme. The electrostatic surface of the protein suggests a binding site for the triphosphate of ATP close to the N-terminal end of the molecule in a cavity between the N- and C-terminal domains. Superposition with a number of calcium-activated photoproteins suggests that there may be parallels between the binding of JH diol to JHDK and the binding of luciferin to aequorin. | ||
+ | |||
+ | The X-ray structure of juvenile hormone diol kinase from the silkworm Bombyx mori.,Guo J, Keegan RM, Rigden DJ, Erskine PT, Wood SP, Li S, Cooper JB Acta Crystallogr F Struct Biol Commun. 2021 Dec 1;77(Pt 12):465-472. doi:, 10.1107/S2053230X21012012. Epub 2021 Nov 25. PMID:34866602<ref>PMID:34866602</ref> | ||
+ | |||
+ | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
+ | </div> | ||
+ | <div class="pdbe-citations 7pjd" style="background-color:#fffaf0;"></div> | ||
+ | == References == | ||
+ | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Bombyx mori]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Cooper J]] | [[Category: Cooper J]] | ||
[[Category: Guo J]] | [[Category: Guo J]] | ||
[[Category: Keegan RM]] | [[Category: Keegan RM]] |
Revision as of 13:05, 1 February 2024
The X-ray structure of juvenile hormone diol kinase from the silk worm Bombyx mori.
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