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7puk
From Proteopedia
(Difference between revisions)
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==Crystal structure of Endoglycosidase E GH18 domain from Enterococcus faecalis in complex with Man5 product== | ==Crystal structure of Endoglycosidase E GH18 domain from Enterococcus faecalis in complex with Man5 product== | ||
| - | <StructureSection load='7puk' size='340' side='right'caption='[[7puk]]' scene=''> | + | <StructureSection load='7puk' size='340' side='right'caption='[[7puk]], [[Resolution|resolution]] 2.69Å' scene=''> |
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PUK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PUK FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[7puk]] is a 2 chain structure with sequence from [https://en.wikipedia.org/wiki/Enterococcus_faecalis Enterococcus faecalis]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=7PUK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=7PUK FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7puk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7puk OCA], [https://pdbe.org/7puk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7puk RCSB], [https://www.ebi.ac.uk/pdbsum/7puk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7puk ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.69Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BMA:BETA-D-MANNOSE'>BMA</scene>, <scene name='pdbligand=MAN:ALPHA-D-MANNOSE'>MAN</scene>, <scene name='pdbligand=NAG:N-ACETYL-D-GLUCOSAMINE'>NAG</scene></td></tr> | ||
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=7puk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=7puk OCA], [https://pdbe.org/7puk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=7puk RCSB], [https://www.ebi.ac.uk/pdbsum/7puk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=7puk ProSAT]</span></td></tr> | ||
</table> | </table> | ||
| + | == Function == | ||
| + | [https://www.uniprot.org/uniprot/Q839P8_ENTFA Q839P8_ENTFA] | ||
| + | <div style="background-color:#fffaf0;"> | ||
| + | == Publication Abstract from PubMed == | ||
| + | Bacteria produce a remarkably diverse range of glycoside hydrolases to metabolize glycans from the environment as a primary source of nutrients, and to promote the colonization and infection of a host. Here we focus on EndoE, a multi-modular glycoside hydrolase secreted by Enterococcus faecalis, one of the leading causes of healthcare-associated infections. We provide X-ray crystal structures of EndoE, which show an architecture composed of four domains, including GH18 and GH20 glycoside hydrolases connected by two consecutive three alpha-helical bundles. We determine that the GH20 domain is an exo-beta-1,2-N-acetylglucosaminidase, whereas the GH18 domain is an endo-beta-1,4-N-acetylglucosaminidase that exclusively processes the central core of complex-type or high-mannose-type N-glycans. Both glycoside hydrolase domains act in a concerted manner to process diverse N-glycans on glycoproteins, including therapeutic IgG antibodies. EndoE combines two enzyme domains with distinct functions and glycan specificities to play a dual role in glycan metabolism and immune evasion. | ||
| + | |||
| + | Mechanism of cooperative N-glycan processing by the multi-modular endoglycosidase EndoE.,Garcia-Alija M, Du JJ, Ordonez I, Diz-Vallenilla A, Moraleda-Montoya A, Sultana N, Huynh CG, Li C, Donahue TC, Wang LX, Trastoy B, Sundberg EJ, Guerin ME Nat Commun. 2022 Mar 3;13(1):1137. doi: 10.1038/s41467-022-28722-w. PMID:35241669<ref>PMID:35241669</ref> | ||
| + | |||
| + | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| + | </div> | ||
| + | <div class="pdbe-citations 7puk" style="background-color:#fffaf0;"></div> | ||
| + | |||
| + | ==See Also== | ||
| + | *[[Beta-N-acetylhexosaminidase 3D structures|Beta-N-acetylhexosaminidase 3D structures]] | ||
| + | == References == | ||
| + | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| + | [[Category: Enterococcus faecalis]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
[[Category: Du JJ]] | [[Category: Du JJ]] | ||
Current revision
Crystal structure of Endoglycosidase E GH18 domain from Enterococcus faecalis in complex with Man5 product
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