1byl

From Proteopedia

(Difference between revisions)
Jump to: navigation, search
Current revision (06:39, 7 February 2024) (edit) (undo)
 
Line 3: Line 3:
<StructureSection load='1byl' size='340' side='right'caption='[[1byl]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
<StructureSection load='1byl' size='340' side='right'caption='[[1byl]], [[Resolution|resolution]] 2.30&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
-
<table><tr><td colspan='2'>[[1byl]] is a 1 chain structure with sequence from [http://en.wikipedia.org/wiki/"streptoalloteichus_hindustanus"_tomita_et_al._1978 "streptoalloteichus hindustanus" tomita et al. 1978]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYL OCA]. For a <b>guided tour on the structure components</b> use [http://proteopedia.org/fgij/fg.htm?mol=1BYL FirstGlance]. <br>
+
<table><tr><td colspan='2'>[[1byl]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptoalloteichus_hindustanus Streptoalloteichus hindustanus]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1BYL OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1BYL FirstGlance]. <br>
-
</td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">SH BLE ([http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=2017 "Streptoalloteichus hindustanus" Tomita et al. 1978])</td></tr>
+
</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.3&#8491;</td></tr>
-
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[http://proteopedia.org/fgij/fg.htm?mol=1byl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byl OCA], [http://pdbe.org/1byl PDBe], [http://www.rcsb.org/pdb/explore.do?structureId=1byl RCSB], [http://www.ebi.ac.uk/pdbsum/1byl PDBsum], [http://prosat.h-its.org/prosat/prosatexe?pdbcode=1byl ProSAT]</span></td></tr>
+
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1byl FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1byl OCA], [https://pdbe.org/1byl PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1byl RCSB], [https://www.ebi.ac.uk/pdbsum/1byl PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1byl ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
-
[[http://www.uniprot.org/uniprot/BLE_STRHI BLE_STRHI]] Binding protein with a strong affinity to the bleomycin family of antibiotics.
+
[https://www.uniprot.org/uniprot/BLE_STRHI BLE_STRHI] Binding protein with a strong affinity to the bleomycin family of antibiotics.
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
Line 19: Line 19:
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1byl ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1byl ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
-
<div style="background-color:#fffaf0;">
 
-
== Publication Abstract from PubMed ==
 
-
The antibiotic bleomycin, a strong DNA cutting agent, is naturally produced by actinomycetes which have developed a resistance mechanism against such a lethal compound. The crystal structure, at 2.3 A resolution, of a bleomycin resistance protein of 14 kDa reveals a structure in two halves with the same alpha/beta fold despite no sequence similarity. The crystal packing shows compact dimers with a hydrophobic interface and involved in mutual chain exchange. Two independent solution studies (analytical centrifugation and light scattering) showed that this dimeric form is not a packing artefact but is indeed the functional one. Furthermore, light scattering also showed that one dimer binds two antibiotic molecules as expected. A crevice located at the dimer interface, as well as the results of a site-directed mutagenesis study, led to a model wherein two bleomycin molecules are completely sequestered by one dimer. This provides a novel insight into antibiotic resistance due to drug sequestering, and probably also into drug transport and excretion.
 
- 
-
Crystal structure and site-directed mutagenesis of a bleomycin resistance protein and their significance for drug sequestering.,Dumas P, Bergdoll M, Cagnon C, Masson JM EMBO J. 1994 Jun 1;13(11):2483-92. PMID:7516875<ref>PMID:7516875</ref>
 
- 
-
From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
-
</div>
 
-
<div class="pdbe-citations 1byl" style="background-color:#fffaf0;"></div>
 
-
== References ==
 
-
<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
-
[[Category: Streptoalloteichus hindustanus tomita et al. 1978]]
 
[[Category: Large Structures]]
[[Category: Large Structures]]
-
[[Category: Bergdoll, M]]
+
[[Category: Streptoalloteichus hindustanus]]
-
[[Category: Cagnon, C]]
+
[[Category: Bergdoll M]]
-
[[Category: Dumas, P]]
+
[[Category: Cagnon C]]
-
[[Category: Masson, J M]]
+
[[Category: Dumas P]]
-
[[Category: Antibiotic]]
+
[[Category: Masson JM]]
-
[[Category: Antibiotic resistance]]
+
-
[[Category: Bleomycin]]
+
-
[[Category: Chain swapping]]
+
-
[[Category: Drug sequestering]]
+

Current revision

BLEOMYCIN RESISTANCE PROTEIN FROM STREPTOALLOTEICHUS HINDUSTANUS

PDB ID 1byl

Drag the structure with the mouse to rotate

Proteopedia Page Contributors and Editors (what is this?)

OCA

Personal tools