1fx3
From Proteopedia
(Difference between revisions)
| Line 3: | Line 3: | ||
<StructureSection load='1fx3' size='340' side='right'caption='[[1fx3]], [[Resolution|resolution]] 2.50Å' scene=''> | <StructureSection load='1fx3' size='340' side='right'caption='[[1fx3]], [[Resolution|resolution]] 2.50Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
| - | <table><tr><td colspan='2'>[[1fx3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/ | + | <table><tr><td colspan='2'>[[1fx3]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Haemophilus_influenzae Haemophilus influenzae]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1FX3 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1FX3 FirstGlance]. <br> |
| - | </td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fx3 OCA], [https://pdbe.org/1fx3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fx3 RCSB], [https://www.ebi.ac.uk/pdbsum/1fx3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fx3 ProSAT]</span></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.5Å</td></tr> |
| + | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1fx3 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1fx3 OCA], [https://pdbe.org/1fx3 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1fx3 RCSB], [https://www.ebi.ac.uk/pdbsum/1fx3 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1fx3 ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
| - | + | [https://www.uniprot.org/uniprot/SECB_HAEIN SECB_HAEIN] One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
| Line 18: | Line 19: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fx3 ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1fx3 ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | SecB is a bacterial molecular chaperone involved in mediating translocation of newly synthesized polypeptides across the cytoplasmic membrane of bacteria. The crystal structure of SecB from Haemophilus influenzae shows that the molecule is a tetramer organized as a dimer of dimers. Two long channels run along the side of the molecule. These are bounded by flexible loops and lined with conserved hydrophobic amino acids, which define a suitable environment for binding non-native polypeptides. The structure also reveals an acidic region on the top surface of the molecule, several residues of which have been implicated in binding to SecA, its downstream target. | ||
| - | |||
| - | Crystal structure of the bacterial protein export chaperone secB.,Xu Z, Knafels JD, Yoshino K Nat Struct Biol. 2000 Dec;7(12):1172-7. PMID:11101901<ref>PMID:11101901</ref> | ||
| - | |||
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 1fx3" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
| - | [[Category: | + | [[Category: Haemophilus influenzae]] |
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
| - | [[Category: Knafels | + | [[Category: Knafels JD]] |
| - | [[Category: Xu | + | [[Category: Xu Z]] |
| - | [[Category: Yoshino | + | [[Category: Yoshino K]] |
| - | + | ||
| - | + | ||
| - | + | ||
Current revision
CRYSTAL STRUCTURE OF H. INFLUENZAE SECB
| |||||||||||

