1g5x
From Proteopedia
(Difference between revisions)
Line 3: | Line 3: | ||
<StructureSection load='1g5x' size='340' side='right'caption='[[1g5x]], [[Resolution|resolution]] 2.45Å' scene=''> | <StructureSection load='1g5x' size='340' side='right'caption='[[1g5x]], [[Resolution|resolution]] 2.45Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[1g5x]] is a 4 chain structure. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G5X FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[1g5x]] is a 4 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1G5X OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1G5X FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.45Å</td></tr> |
- | + | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g5x OCA], [https://pdbe.org/1g5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g5x RCSB], [https://www.ebi.ac.uk/pdbsum/1g5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g5x ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1g5x FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1g5x OCA], [https://pdbe.org/1g5x PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1g5x RCSB], [https://www.ebi.ac.uk/pdbsum/1g5x PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1g5x ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
- | + | [https://www.uniprot.org/uniprot/FABB_ECOLI FABB_ECOLI] Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Specific for elongation from C-10 to unsaturated C-16 and C-18 fatty acids. | |
== Evolutionary Conservation == | == Evolutionary Conservation == | ||
[[Image:Consurf_key_small.gif|200px|right]] | [[Image:Consurf_key_small.gif|200px|right]] | ||
Line 20: | Line 19: | ||
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g5x ConSurf]. | </jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1g5x ConSurf]. | ||
<div style="clear:both"></div> | <div style="clear:both"></div> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | The molecular details that govern the specific interactions between acyl carrier protein (ACP) and the enzymes of fatty acid biosynthesis are unknown. We investigated the mechanism of ACP-protein interactions using a computational analysis to dock the NMR structure of ACP with the crystal structure of beta-ketoacyl-ACP synthase III (FabH) and experimentally tested the model by the biochemical analysis of FabH mutants. The activities of the mutants were assessed using both an ACP-dependent and an ACP-independent assay. The ACP interaction surface was defined by mutations that compromised FabH activity in the ACP-dependent assay but had no effect in the ACP-independent assay. ACP docked to a positively charged/hydrophobic patch adjacent to the active site tunnel on FabH, which included a conserved arginine (Arg-249) that was required for ACP docking. Kinetic analysis and direct binding studies between FabH and ACP confirmed the identification of Arg-249 as critical for FabH-ACP interaction. Our experiments reveal the significance of the positively charged/hydrophobic patch located adjacent to the active site cavities of the fatty acid biosynthesis enzymes and the high degree of sequence conservation in helix II of ACP across species. | ||
- | |||
- | Identification and analysis of the acyl carrier protein (ACP) docking site on beta-ketoacyl-ACP synthase III.,Zhang YM, Rao MS, Heath RJ, Price AC, Olson AJ, Rock CO, White SW J Biol Chem. 2001 Mar 16;276(11):8231-8. Epub 2000 Nov 14. PMID:11078736<ref>PMID:11078736</ref> | ||
- | |||
- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 1g5x" style="background-color:#fffaf0;"></div> | ||
==See Also== | ==See Also== | ||
*[[Acyl carrier protein synthase 3D structures|Acyl carrier protein synthase 3D structures]] | *[[Acyl carrier protein synthase 3D structures|Acyl carrier protein synthase 3D structures]] | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Escherichia coli]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Heath | + | [[Category: Heath RJ]] |
- | [[Category: Olson | + | [[Category: Olson AJ]] |
- | [[Category: Price | + | [[Category: Price AC]] |
- | [[Category: Rao | + | [[Category: Rao MS]] |
- | [[Category: Rock | + | [[Category: Rock CO]] |
- | [[Category: White | + | [[Category: White SW]] |
- | [[Category: Zhang | + | [[Category: Zhang YM]] |
- | + | ||
- | + | ||
- | + |
Current revision
The Structure of Beta-Ketoacyl-[Acyl Carrier Protein] Synthase I
|
Categories: Escherichia coli | Large Structures | Heath RJ | Olson AJ | Price AC | Rao MS | Rock CO | White SW | Zhang YM