1hz6

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Current revision (07:31, 7 February 2024) (edit) (undo)
 
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<StructureSection load='1hz6' size='340' side='right'caption='[[1hz6]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
<StructureSection load='1hz6' size='340' side='right'caption='[[1hz6]], [[Resolution|resolution]] 1.70&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[1hz6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Finm2 Finm2]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HZ6 FirstGlance]. <br>
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<table><tr><td colspan='2'>[[1hz6]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Finegoldia_magna_ATCC_29328 Finegoldia magna ATCC 29328]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=1HZ6 OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=1HZ6 FirstGlance]. <br>
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</td></tr><tr id='related'><td class="sblockLbl"><b>[[Related_structure|Related:]]</b></td><td class="sblockDat"><div style='overflow: auto; max-height: 3em;'>[[1hz5|1hz5]], [[2ptl|2ptl]]</div></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1.7&#8491;</td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz6 OCA], [https://pdbe.org/1hz6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hz6 RCSB], [https://www.ebi.ac.uk/pdbsum/1hz6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hz6 ProSAT]</span></td></tr>
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=1hz6 FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=1hz6 OCA], [https://pdbe.org/1hz6 PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=1hz6 RCSB], [https://www.ebi.ac.uk/pdbsum/1hz6 PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=1hz6 ProSAT]</span></td></tr>
</table>
</table>
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== Function ==
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[https://www.uniprot.org/uniprot/Q51912_FINMA Q51912_FINMA]
== Evolutionary Conservation ==
== Evolutionary Conservation ==
[[Image:Consurf_key_small.gif|200px|right]]
[[Image:Consurf_key_small.gif|200px|right]]
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</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hz6 ConSurf].
</jmol>, as determined by [http://consurfdb.tau.ac.il/ ConSurfDB]. You may read the [[Conservation%2C_Evolutionary|explanation]] of the method and the full data available from [http://bental.tau.ac.il/new_ConSurfDB/main_output.php?pdb_ID=1hz6 ConSurf].
<div style="clear:both"></div>
<div style="clear:both"></div>
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<div style="background-color:#fffaf0;">
 
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== Publication Abstract from PubMed ==
 
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The three-dimensional structure of a tryptophan-containing variant of the IgG-binding B1 domain of protein L has been solved in two crystal forms to 1.7 and 1.8 A resolution. In one of the crystal forms, the entire N-terminal histidine-tag region was immobilized through the coordination of zinc ions and its structural conformation along with the zinc coordination scheme were determined. However, the ordering of the histidine tag by zinc does not affect the overall structure of the rest of the protein. Structural comparisons of the tryptophan-containing variant with an NMR-derived wild-type structure, which contains a tyrosine at position 47, reveals a common fold, although the overall backbone root-mean-square difference is 1.5 A. The Y47W substitution only caused local rearrangement of several side chains, the most prominent of which is the rotation of the Tyr34 side chain, resulting in a 6 A displacement of its hydroxyl group. A small methyl-sized cavity bounded by beta-strands 1, 2 and 4 and the alpha-helix was found in the structures of the Y47W-substituted protein L B1 domain. This cavity may be created as the result of subsequent side-chain rearrangements caused by the Y47W substitution. These high-resolution structures of the tryptophan-containing variant provide a reference frame for the analysis of thermodynamic and kinetic data derived from a series of mutational studies of the protein L B1 domain.
 
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Structures of the B1 domain of protein L from Peptostreptococcus magnus with a tyrosine to tryptophan substitution.,O'Neill JW, Kim DE, Baker D, Zhang KY Acta Crystallogr D Biol Crystallogr. 2001 Apr;57(Pt 4):480-7. PMID:11264576<ref>PMID:11264576</ref>
 
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
 
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</div>
 
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<div class="pdbe-citations 1hz6" style="background-color:#fffaf0;"></div>
 
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== References ==
 
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<references/>
 
__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Finm2]]
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[[Category: Finegoldia magna ATCC 29328]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Baker, D]]
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[[Category: Baker D]]
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[[Category: Kim, D E]]
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[[Category: Kim DE]]
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[[Category: Neill, J W.O]]
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[[Category: O'Neill JW]]
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[[Category: Zhang, K Y.J]]
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[[Category: Zhang KYJ]]
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[[Category: Binds kappa light chain of immunoglobulin]]
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[[Category: Four stranded beta-sheet with central alpha helix]]
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[[Category: Protein binding]]
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Current revision

CRYSTAL STRUCTURES OF THE B1 DOMAIN OF PROTEIN L FROM PEPTOSTREPTOCOCCUS MAGNUS WITH A TYROSINE TO TRYPTOPHAN SUBSTITUTION

PDB ID 1hz6

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