8b8f
From Proteopedia
(Difference between revisions)
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== Structural highlights == | == Structural highlights == | ||
<table><tr><td colspan='2'>[[8b8f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Laccaria_bicolor_S238N-H53 Laccaria bicolor S238N-H53]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B8F FirstGlance]. <br> | <table><tr><td colspan='2'>[[8b8f]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Laccaria_bicolor_S238N-H53 Laccaria bicolor S238N-H53]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=8B8F OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=8B8F FirstGlance]. <br> | ||
| - | </td></tr><tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900004:beta-lactose'>PRD_900004</scene>, <scene name='pdbligand=PRD_900008:alpha-lactose'>PRD_900008</scene></td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 1Å</td></tr> |
| + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=BGC:BETA-D-GLUCOSE'>BGC</scene>, <scene name='pdbligand=GAL:BETA-D-GALACTOSE'>GAL</scene>, <scene name='pdbligand=GLC:ALPHA-D-GLUCOSE'>GLC</scene>, <scene name='pdbligand=PRD_900004:beta-lactose'>PRD_900004</scene>, <scene name='pdbligand=PRD_900008:alpha-lactose'>PRD_900008</scene></td></tr> | ||
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b8f OCA], [https://pdbe.org/8b8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b8f RCSB], [https://www.ebi.ac.uk/pdbsum/8b8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b8f ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=8b8f FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=8b8f OCA], [https://pdbe.org/8b8f PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=8b8f RCSB], [https://www.ebi.ac.uk/pdbsum/8b8f PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=8b8f ProSAT]</span></td></tr> | ||
</table> | </table> | ||
== Function == | == Function == | ||
[https://www.uniprot.org/uniprot/B0D650_LACBS B0D650_LACBS] | [https://www.uniprot.org/uniprot/B0D650_LACBS B0D650_LACBS] | ||
| - | <div style="background-color:#fffaf0;"> | ||
| - | == Publication Abstract from PubMed == | ||
| - | Lectins from fruiting bodies are a diverse group of sugar-binding proteins from mushrooms that face the biologically relevant challenge of discriminating self- from non-self carbohydrate structures, therefore providing a basis for an innate defence system. Such a system entails both detection and destruction of invaders and/or feeders, and in contrast to more complex organisms with immense immune systems, these two functions normally rely on multitasking lectins, namely, lectins with different functional modules. Here, we present a novel fungal lectin, LBL, from the basidiomycete Laccaria bicolor. Using a diverse set of biophysical techniques, we unveil the fine details of the sugar-binding specificity of the N-terminal beta-trefoil of LBL (LBL(152)), whose structure has been determined at the highest resolution so far reported for such a fold. LBL(152) binds complex poly-N-Acetyllactosamine polysaccharides and also robust LBL(152) binding to Caenorhabditis elegans and Drosophila melanogaster cellular extracts was detected in microarray assays, with a seeming preference for the fruit fly adult and pupa stages over the larva stage. Prediction of the structure of the C-terminal part of LBL with AlphaFold reveals a tandem repeat of two structurally almost identical domains of around 110 amino acids each, despite sharing low sequence conservation. | ||
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| - | Atomic crystal structure and sugar specificity of a beta-trefoil lectin domain from the ectomycorrhizal basidiomycete Laccaria bicolor.,Acebron I, Campanero-Rhodes MA, Solis D, Menendez M, Garcia C, Lillo MP, Mancheno JM Int J Biol Macromol. 2023 Feb 7;233:123507. doi: 10.1016/j.ijbiomac.2023.123507. PMID:36754262<ref>PMID:36754262</ref> | ||
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| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
| - | </div> | ||
| - | <div class="pdbe-citations 8b8f" style="background-color:#fffaf0;"></div> | ||
| - | == References == | ||
| - | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
Current revision
Atomic structure of the beta-trefoil domain of the Laccaria bicolor lectin LBL in complex with lactose
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