364d
From Proteopedia
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<StructureSection load='364d' size='340' side='right'caption='[[364d]], [[Resolution|resolution]] 3.00Å' scene=''> | <StructureSection load='364d' size='340' side='right'caption='[[364d]], [[Resolution|resolution]] 3.00Å' scene=''> | ||
== Structural highlights == | == Structural highlights == | ||
- | <table><tr><td colspan='2'>[[364d]] is a 3 chain structure. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=356d 356d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=364D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=364D FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[364d]] is a 3 chain structure with sequence from [https://en.wikipedia.org/wiki/Escherichia_coli Escherichia coli]. This structure supersedes the now removed PDB entry [http://oca.weizmann.ac.il/oca-bin/send-pdb?obs=1&id=356d 356d]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=364D OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=364D FirstGlance]. <br> |
- | </td></tr><tr id=' | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 3Å</td></tr> |
- | <tr id=' | + | <tr id='ligand'><td class="sblockLbl"><b>[[Ligand|Ligands:]]</b></td><td class="sblockDat" id="ligandDat"><scene name='pdbligand=1SC:5-O-THIOPHOSPHONOCYTIDINE'>1SC</scene>, <scene name='pdbligand=MG:MAGNESIUM+ION'>MG</scene></td></tr> |
<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=364d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=364d OCA], [https://pdbe.org/364d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=364d RCSB], [https://www.ebi.ac.uk/pdbsum/364d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=364d ProSAT]</span></td></tr> | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=364d FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=364d OCA], [https://pdbe.org/364d PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=364d RCSB], [https://www.ebi.ac.uk/pdbsum/364d PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=364d ProSAT]</span></td></tr> | ||
</table> | </table> | ||
- | <div style="background-color:#fffaf0;"> | ||
- | == Publication Abstract from PubMed == | ||
- | Two new RNA structures portray how non-Watson-Crick base pairs and metal ions can produce a unique RNA shape suitable for recognition by proteins. The crystal structures of a 62 nt domain of E. coli 5S ribosomal RNA and a duplex dodecamer encompassing an internal loop E have been determined at 3.0 and 1.5 A, respectively. This loop E region is distorted by three "cross-strand purine stacks" and three novel, water-mediated noncanonical base pairs and stabilized by a four metal ion zipper. These features give its minor groove a unique hydrogen-bonding surface and make the adjacent major groove wide enough to permit recognition by the ribosomal protein L25, which is expected to bind to this surface. | ||
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- | Metals, motifs, and recognition in the crystal structure of a 5S rRNA domain.,Correll CC, Freeborn B, Moore PB, Steitz TA Cell. 1997 Nov 28;91(5):705-12. PMID:9393863<ref>PMID:9393863</ref> | ||
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- | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br> | ||
- | </div> | ||
- | <div class="pdbe-citations 364d" style="background-color:#fffaf0;"></div> | ||
- | == References == | ||
- | <references/> | ||
__TOC__ | __TOC__ | ||
</StructureSection> | </StructureSection> | ||
+ | [[Category: Escherichia coli]] | ||
[[Category: Large Structures]] | [[Category: Large Structures]] | ||
- | [[Category: Correll | + | [[Category: Correll CC]] |
- | [[Category: Freeborn | + | [[Category: Freeborn B]] |
- | [[Category: Moore | + | [[Category: Moore PB]] |
- | [[Category: Steitz | + | [[Category: Steitz TA]] |
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Current revision
3.0 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA
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