3agk

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<StructureSection load='3agk' size='340' side='right'caption='[[3agk]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
<StructureSection load='3agk' size='340' side='right'caption='[[3agk]], [[Resolution|resolution]] 2.10&Aring;' scene=''>
== Structural highlights ==
== Structural highlights ==
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<table><tr><td colspan='2'>[[3agk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aerpx Aerpx]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AGK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AGK FirstGlance]. <br>
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<table><tr><td colspan='2'>[[3agk]] is a 1 chain structure with sequence from [https://en.wikipedia.org/wiki/Aeropyrum_pernix Aeropyrum pernix]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3AGK OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3AGK FirstGlance]. <br>
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</td></tr><tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3agk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3agk OCA], [https://pdbe.org/3agk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3agk RCSB], [https://www.ebi.ac.uk/pdbsum/3agk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3agk ProSAT]</span></td></tr>
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</td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.1&#8491;</td></tr>
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<tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3agk FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3agk OCA], [https://pdbe.org/3agk PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3agk RCSB], [https://www.ebi.ac.uk/pdbsum/3agk PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3agk ProSAT]</span></td></tr>
</table>
</table>
== Function ==
== Function ==
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[[https://www.uniprot.org/uniprot/RF1_AERPE RF1_AERPE]] Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA (By similarity).
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[https://www.uniprot.org/uniprot/RF1_AERPE RF1_AERPE] Directs the termination of nascent peptide synthesis (translation) in response to the termination codons UAA, UAG and UGA (By similarity).
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<div style="background-color:#fffaf0;">
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== Publication Abstract from PubMed ==
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The molecular mechanisms of translation termination and mRNA surveillance in archaea remain unclear. In eukaryotes, eRF3 and HBS1, which are homologous to the tRNA carrier GTPase EF1alpha, respectively bind eRF1 and Pelota to decipher stop codons or to facilitate mRNA surveillance. However, genome-wide searches of archaea have failed to detect any orthologs to both GTPases. Here, we report the crystal structure of aRF1 from an archaeon, Aeropyrum pernix, and present strong evidence that the authentic archaeal EF1alpha acts as a carrier GTPase for aRF1 and for aPelota. The binding interface residues between aRF1 and aEF1alpha predicted from aRF1.aEF1alpha.GTP ternary structure model were confirmed by in vivo functional assays. The aRF1/eRF1 structural domain with GGQ motif, which corresponds to the CCA arm of tRNA, contacts with all three structural domains of aEF1alpha showing striking tRNA mimicry of aRF1/eRF1 and its GTPase-mediated catalysis for stop codon decoding. The multiple binding capacity of archaeal EF1alpha explains the absence of GTPase orthologs for eRF3 and HBS1 in archaea species and suggests that universal molecular mechanisms underlie translational elongation and termination, and mRNA surveillance pathways.
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Omnipotent role of archaeal elongation factor 1 alpha (EF1{alpha}) in translational elongation and termination, and quality control of protein synthesis.,Saito K, Kobayashi K, Wada M, Kikuno I, Takusagawa A, Mochizuki M, Uchiumi T, Ishitani R, Nureki O, Ito K Proc Natl Acad Sci U S A. 2010 Nov 9;107(45):19242-7. Epub 2010 Oct 25. PMID:20974926<ref>PMID:20974926</ref>
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From MEDLINE&reg;/PubMed&reg;, a database of the U.S. National Library of Medicine.<br>
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</div>
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<div class="pdbe-citations 3agk" style="background-color:#fffaf0;"></div>
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== References ==
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<references/>
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__TOC__
__TOC__
</StructureSection>
</StructureSection>
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[[Category: Aerpx]]
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[[Category: Aeropyrum pernix]]
[[Category: Large Structures]]
[[Category: Large Structures]]
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[[Category: Ishitani, R]]
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[[Category: Ishitani R]]
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[[Category: Ito, K]]
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[[Category: Ito K]]
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[[Category: Kikuno, I]]
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[[Category: Kikuno I]]
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[[Category: Kobayashi, K]]
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[[Category: Kobayashi K]]
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[[Category: Nureki, O]]
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[[Category: Nureki O]]
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[[Category: Translation]]
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Revision as of 08:40, 7 February 2024

Crystal structure of archaeal translation termination factor, aRF1

PDB ID 3agk

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