|
|
| Line 3: |
Line 3: |
| | <StructureSection load='3mfm' size='340' side='right'caption='[[3mfm]], [[Resolution|resolution]] 2.38Å' scene=''> | | <StructureSection load='3mfm' size='340' side='right'caption='[[3mfm]], [[Resolution|resolution]] 2.38Å' scene=''> |
| | == Structural highlights == | | == Structural highlights == |
| - | <table><tr><td colspan='2'>[[3mfm]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/"actinomyces_coelicolor"_(muller_1908)_lieske_1921 "actinomyces coelicolor" (muller 1908) lieske 1921]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MFM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MFM FirstGlance]. <br> | + | <table><tr><td colspan='2'>[[3mfm]] is a 6 chain structure with sequence from [https://en.wikipedia.org/wiki/Streptomyces_coelicolor Streptomyces coelicolor]. Full crystallographic information is available from [http://oca.weizmann.ac.il/oca-bin/ocashort?id=3MFM OCA]. For a <b>guided tour on the structure components</b> use [https://proteopedia.org/fgij/fg.htm?mol=3MFM FirstGlance]. <br> |
| - | </td></tr><tr id='gene'><td class="sblockLbl"><b>[[Gene|Gene:]]</b></td><td class="sblockDat">pccB, SCK13.18c, SCO4926 ([https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?mode=Info&srchmode=5&id=1902 "Actinomyces coelicolor" (Muller 1908) Lieske 1921])</td></tr> | + | </td></tr><tr id='method'><td class="sblockLbl"><b>[[Empirical_models|Method:]]</b></td><td class="sblockDat" id="methodDat">X-ray diffraction, [[Resolution|Resolution]] 2.38Å</td></tr> |
| | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mfm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mfm OCA], [https://pdbe.org/3mfm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mfm RCSB], [https://www.ebi.ac.uk/pdbsum/3mfm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mfm ProSAT]</span></td></tr> | | <tr id='resources'><td class="sblockLbl"><b>Resources:</b></td><td class="sblockDat"><span class='plainlinks'>[https://proteopedia.org/fgij/fg.htm?mol=3mfm FirstGlance], [http://oca.weizmann.ac.il/oca-bin/ocaids?id=3mfm OCA], [https://pdbe.org/3mfm PDBe], [https://www.rcsb.org/pdb/explore.do?structureId=3mfm RCSB], [https://www.ebi.ac.uk/pdbsum/3mfm PDBsum], [https://prosat.h-its.org/prosat/prosatexe?pdbcode=3mfm ProSAT]</span></td></tr> |
| | </table> | | </table> |
| - | <div style="background-color:#fffaf0;">
| + | == Function == |
| - | == Publication Abstract from PubMed == | + | [https://www.uniprot.org/uniprot/Q9X4K7_STRCH Q9X4K7_STRCH] |
| - | The first committed step of fatty acid and polyketides biosynthesis, the biotin-dependent carboxylation of an acyl-CoA, is catalyzed by acyl-CoA carboxylases (ACCases) such as acetyl-CoA carboxylase (ACC) and propionyl-CoA carboxylase (PCC). ACC and PCC in Streptomyces coelicolor are homologue multisubunit complexes that can carboxylate different short chain acyl-CoAs. While ACC is able to carboxylate acetyl-, propionyl-, or butyryl-CoA with approximately the same specificity, PCC only recognizes propionyl- and butyryl-CoA as substrates. How ACC and PCC have such different specificities toward these substrates is only partially understood. To further understand the molecular basis of how the active site residues can modulate the substrate recognition, we mutated D422, N80, R456, and R457 of PccB, the catalytic beta subunit of PCC. The crystal structures of six PccB mutants and the wild type crystal structure were compared systematically to establish the sequence-structure-function relationship that correlates the observed substrate specificity toward acetyl-, propionyl-, and butyryl-CoA with active site geometry. The experimental data confirmed that D422 is a key determinant of substrate specificity, influencing not only the active site properties but further altering protein stability and causing long-range conformational changes. Mutations of N80, R456, and R457 lead to variations in the quaternary structure of the beta subunit and to a concomitant loss of enzyme activity, indicating the importance of these residues in maintaining the active protein conformation as well as a critical role in substrate binding.
| + | |
| - | | + | |
| - | Crystal structures and mutational analyses of acyl-CoA carboxylase beta subunit of Streptomyces coelicolor.,Arabolaza A, Shillito ME, Lin TW, Diacovich L, Melgar M, Pham H, Amick D, Gramajo H, Tsai SC Biochemistry. 2010 Aug 31;49(34):7367-76. PMID:20690600<ref>PMID:20690600</ref>
| + | |
| - | | + | |
| - | From MEDLINE®/PubMed®, a database of the U.S. National Library of Medicine.<br>
| + | |
| - | </div>
| + | |
| - | <div class="pdbe-citations 3mfm" style="background-color:#fffaf0;"></div>
| + | |
| - | == References ==
| + | |
| - | <references/>
| + | |
| | __TOC__ | | __TOC__ |
| | </StructureSection> | | </StructureSection> |
| | [[Category: Large Structures]] | | [[Category: Large Structures]] |
| - | [[Category: Arabolaza, A]] | + | [[Category: Streptomyces coelicolor]] |
| - | [[Category: Diacovich, L]] | + | [[Category: Arabolaza A]] |
| - | [[Category: Lin, T W]] | + | [[Category: Diacovich L]] |
| - | [[Category: Melgar, M M]] | + | [[Category: Lin T-W]] |
| - | [[Category: Mitchell, D L]] | + | [[Category: Melgar MM]] |
| - | [[Category: Shillito, E M]] | + | [[Category: Mitchell DL]] |
| - | [[Category: Acc]]
| + | [[Category: Shillito EM]] |
| - | [[Category: Accase]]
| + | |
| - | [[Category: Acyl-coa]]
| + | |
| - | [[Category: Acyl-coa carboxylase]]
| + | |
| - | [[Category: Beta subunit]]
| + | |
| - | [[Category: Biotin]]
| + | |
| - | [[Category: Carboxylase]]
| + | |
| - | [[Category: Carboxyltransferase]]
| + | |
| - | [[Category: Ct]]
| + | |
| - | [[Category: Fa]]
| + | |
| - | [[Category: Fatty acid]]
| + | |
| - | [[Category: Fatty acid synthase]]
| + | |
| - | [[Category: Ligase]]
| + | |
| - | [[Category: Pcc]]
| + | |
| - | [[Category: Pccase]]
| + | |
| - | [[Category: Pccb]]
| + | |
| - | [[Category: Pk]]
| + | |
| - | [[Category: Polyketide]]
| + | |
| - | [[Category: Polyketide synthase]]
| + | |
| - | [[Category: Propionyl-coa]]
| + | |
